| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_3675 |
|---|
| Symbol | |
|---|
| ID | 5077823 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009427 |
|---|
| Strand | - |
|---|
| Start bp | 308174 |
|---|
| End bp | 309382 |
|---|
| Gene Length | 1209 bp |
|---|
| Protein Length | 402 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640481398 |
|---|
| Product | mandelate racemase/muconate lactonizing protein |
|---|
| Protein accession | YP_001166060 |
|---|
| Protein GI | 146275900 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
|---|
| COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.468042 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATCA CCGCCGCCCG CGTCATCATC ACCTGTCCGG GCCGCAACTT CGTGACGCTC
AAGATCGAGA CCGATCAGGG CGTCTACGGT ATCGGCGATG CCACGCTCAA CGGGCGCGAA
CTCTCGGTCG TCGCCTACCT GCAGGAACAC GTCGCGCCTT GCCTCATCGG CATGGACCCG
CGCCGCATCG AGGACATCTG GCAGTATGTC TATCGCGGCG CCTACTGGCG GCGCGGCCCG
GTGACGATGC GCGCGATCGC CGCGGTCGAC ATGGCACTGT GGGACATCAA GGCCAAGATG
GCCGGCATGC CGCTGTACCA GCTTCTGGGC GGACGCAGCC GCGACGGGAT CATGGTCTAC
GGCCACGCCA ACGGCTCGGA CATCGCAGAG ACGGTGGAGG CCGTCGGCCA CTACATCGAC
ATGGGCTACA AGGCGATCCG CGCCCAGACC GGCGTGCCCG GCATCAAGGA CGCCTATGGC
GTGGGTCGCG GCAAGCTCTA CTACGAACCG GCCGATGCCA GCCTCCCCTC GGTCACCGGC
TGGGACACGC GCAAGGCACT GAATTACGTG CCAAAGTTGT TCGAGGAACT GCGCAAGACC
TACGGCTTCG ACCACCACCT CCTGCACGAT GGCCACCACC GCTACACCCC GCAGGAAGCC
GCCAACCTCG GCAAGATGCT CGAACCCTAC CAGCTGTTCT GGCTGGAGGA CTGCACCCCT
GCCGAAAACC AGGAAGCTTT CAGGCTCGTC CGCCAGCACA CCGTCACCCC GCTCGCCGTG
GGCGAGATCT TCAACACGAT CTGGGACGCC AAGGACCTGA TCCAGAACCA GCTCATCGAC
TACATCCGCG CCACCGTCGT CGGCGCGGGC GGCCTCACCC ACCTGCGCCG CATCGCCGAC
CTTGCCAGCC TCTACCAGGT CCGCACCGGC TGCCACGGCG CGACCGACCT TTCGCCGGTG
ACGATGGGCT GCGCGCTTCA CTTCGACACC TGGGTGCCCA ACTTCGGCAT CCAGGAATAC
ATGCGCCACA CCGAGGAGAC CGACGCGGTG TTCCCGCACG ACTACTGGTT CGAGAAGGGT
GAGCTGTTCG TCGGCGAAAC CCCCGGCCAC GGCGTCGACA TCGACGAGGA ACTGGCTGCC
AAATACCCTT ACAAGCCCGC CTACCTGCCG GTTGCCCGGC TGGAAGACGG CACGATGTGG
AACTGGTAA
|
|---|
| Protein sequence | MKITAARVII TCPGRNFVTL KIETDQGVYG IGDATLNGRE LSVVAYLQEH VAPCLIGMDP
RRIEDIWQYV YRGAYWRRGP VTMRAIAAVD MALWDIKAKM AGMPLYQLLG GRSRDGIMVY
GHANGSDIAE TVEAVGHYID MGYKAIRAQT GVPGIKDAYG VGRGKLYYEP ADASLPSVTG
WDTRKALNYV PKLFEELRKT YGFDHHLLHD GHHRYTPQEA ANLGKMLEPY QLFWLEDCTP
AENQEAFRLV RQHTVTPLAV GEIFNTIWDA KDLIQNQLID YIRATVVGAG GLTHLRRIAD
LASLYQVRTG CHGATDLSPV TMGCALHFDT WVPNFGIQEY MRHTEETDAV FPHDYWFEKG
ELFVGETPGH GVDIDEELAA KYPYKPAYLP VARLEDGTMW NW
|
|---|
| |