Gene Strop_4560 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagStrop_4560 
Symbol 
ID5061050 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora tropica CNB-440 
KingdomBacteria 
Replicon accessionNC_009380 
Strand
Start bp5148537 
End bp5151464 
Gene Length2928 bp 
Protein Length975 aa 
Translation table11 
GC content68% 
IMG OID640476827 
Productglycosyl transferase family protein 
Protein accessionYP_001161366 
Protein GI145597069 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0744] Membrane carboxypeptidase (penicillin-binding protein) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACTCGT ACGGCGACCC CAGCTCCTCG CGCGGGCGGG CCCAGATACC GGGCCAGCAC 
GGCGTCCCCG GACGGGCCGA CGACGCGTAC CGGGCCTCCG ATGGTGCGGC GCGCGGCCAG
TCGGCCGCAC CGGAGGGAAC AGCGGGCCGC GCCTCGGTGA CACCCCGGGG CGGCGCTTCC
AGCGGCCGCG CCTCGGTTGG TGGCTCGGCG TCCGTCCCCT CCCAGGGCAC TGCCGGCTCG
GCCTCAGTCG GTCGGGCAGG TCGCGCCTCG GTTCCGGCAT CGGCTGGACC TGGCCGTGCC
TCGGTACCGG CGCCGTCCGC GCCCGGCCGC GCCTCCGTGC CGGTATCCCC CGCGCCGGGC
GGCTCCGCCG GGCGCGCAAG CGTCGGCGCT GCGAGCGGCT CGGCCTCGGT TGGCTCGGCC
TCGGTTGGCT CGGCGTCCGT TGGGTCGGCC TCGGTTGGCT CGGCGTCCGT GGGGCGGGCC
CGAGCCGGCG CAGCGGCCGG GGGCCGGGCC TCGGTGCCGC GGGCCGGTGT CGCGTCGGCC
GCCGGTGGTC CCGGTGGCCC GGGCGGCCCC GGTGGGTCGG GCCGATCCCG AAACGGTGGT
CGTGACCCGA ACGCCGTCGC ACGGGCGAAG AAGCGGAAGC GGGCGAACAT GTTGATCGCC
TCGTTCGCGG TCCTCATCAT GTTCGCCGGC CTGGGCGTTG TCGGCTTCAC CTACTTCTCC
ACCGGCGTCG TCCTGCCCGA CCAGATTCCC CTTCCCCAGT CGACGACGGT CTACACGAGT
GACGGCAAGG GGCTGGTCGC GAAGCTCGGC AACGAGAACC GGACGCTGAT CACCACCAGT
CAGATGCCGC AGCACGTGCG CGACGCGGTC GCCGCGGCCG AGGACCGGAA CTTCTACCGG
CACTCGGGTG TCGACTACAA GGGCATCGCC CGGGCCGCCT GGAACAACTT CACCGGTGGC
GACCGGCAGG GTGCGTCGAC GATCACGCAG CAGTACGCGC GTAACGCCTA CGAGAGCCTT
GAGGACGACA CCTACGCCCG AAAGGTGCGG GAGGCGATCT TCGCCTCCAA GCTGAACGAC
CAGTTCAGCA AAGACAAGAT CATGGAAAAC TATCTCAACG TGATCTACTT CGGCCGTGGT
GCCTACGGGG TCGAGGCCGC GGCGCAGACC TTCTTCGGCA AGGCCGCCAG CAAGTTGACC
GTCGGCGAGG GCGCGGTGCT GGCCGGGCTC ATCAAGCAGC CGGAGAAGAC CGCCACCCAC
AACGGCTACG ACCCGGCGGT CAGCCCGGAC GACGCGAAGT CGCGCTGGGA CTACGTCCTC
GACGGAATGG TGGCCGAGGG CTGGCTCGAC GCGGCGGAGC GGCCGACCGA ATATCCAGAG
GTGAAGCCGC TGGCCGAGGG GGGCAACGGC TTCGGCGTGG CGACCCCCCG CGGCAACGTC
ATCAACTACG TGCGGGCGGA GATGGAGCAG TGGGGGCTCT GCACCAACAC GGGAGCGGGG
ACCGAGGGTA AGCCCTCCTG CGGGGACGCG CTGCGCAAGG GTGGTTACAA GATCACCACG
ACCATCGACA ACCGGATGCA GACCGCGATG GAGAAGGCAG CACGGGCGGG GGTGAAGGGC
TCGGTCCTCG ACGGCCAGCC GGATAACCTG ATGGCCGCGG GAGTCGCCGT CGATCCCAAG
ACCGGCCGGG TGCTCGCCTA CTACGGTGGG GAGAGTGGCG CCGATATTGA CTATGCCGGC
AAGAACACCC TGGGGGGCGT GCTCACCGGG GGCCATCCAC CCGCCTCGTC CTTCAAGGTC
TACACCCTGG CCGCCGCCAT CGAGGCCGGC ATCTCCGTCA ACTCGCGGTG GGACGCGACG
CCCTTCACGC CCGAGGGCTA CGAAAGTCGC ATTTGGAACG CGGGTCGAGA CGTCAGTAAG
ACCTGTAACA AGTCCTGCAC CCTCGACGAG TCGACGGTCC GGTCGTACAA CGTTCCGTTC
TTCCACGTGG CGGAGCAGAT TGGCCCGGAC AAGGTGGTCA GCATGGCCCG GCAGGCCGGC
ATCACCACCA TGTGGGACGA CGATCGCGAG CCGTTCAACC TGTTGGCGGA GAAGCCGGAG
GACCTGGCGC CGGAGTATTT CGACCGGGTG GTGGGCTATG GCCAGTACGC GGTCACCGTC
CTCGACCATG CCAACGGTCT CGCGACGCTG GCGAACGACG GCGTCTTCCA CAAGGCGCAC
TTTGTGCTCA AGGTCGAGCA GAAGGACGAG AAGACCGGCG AGTGGAAGGT CGTCAGCGGG
ACCGGCGAGA AGCTGGACGG GCAGCAACGG ATTCGCAAGG GCGTCGCCGA TGAGGTGACC
GCGGTGCTCA AGCAGATTCC GAGCAGGACC GACAACGCCC TCTCCGGGAG TCGGCCGGCA
GCCGGGAAGA CCGGCACCTG GGAATTGGAC GGGACCGACA AGCACGAGCA TGCCTGGATG
GTCGGCTACG ACGACAACCT GGCGACCGCG ATCTGGATCG GCAGCCACAA CACCGAGGAA
CCCGCGATCG TCGACAAGAA CAACAGGAAT ATCGGCGGTA GTGGTCTTCC GGCGGCTCTG
TGGAAACGGT TCATGGACGA GGCGCTGGAC GGCGCGCCCA AGTCTGACCT GCCGCGCATC
ACCGGTGCCG GCGACGACAA GGCCGGTAAC GGTGAGCTGC CGGAGGAACC AAAGTCGGAC
TGTAACGCGT TGTTCGACGT GTTCTGCAAC AACGACGGCA ACAACAACAA CGACGACGGC
AACAACAACA ACGGCGGTGG CGACAACAAC GGCGGTGGCG ACAACAACGG CGGTGGCAAC
AACAACGGCG GTGGCAACAA CAACAACGGC GGTGGCAACA ACAACGGCGG GGATACCGGG
CTCCCGCCAC CGTCGAACGG AGGCACCGGA CGCCCTGGGC GGGACTAG
 
Protein sequence
MNSYGDPSSS RGRAQIPGQH GVPGRADDAY RASDGAARGQ SAAPEGTAGR ASVTPRGGAS 
SGRASVGGSA SVPSQGTAGS ASVGRAGRAS VPASAGPGRA SVPAPSAPGR ASVPVSPAPG
GSAGRASVGA ASGSASVGSA SVGSASVGSA SVGSASVGRA RAGAAAGGRA SVPRAGVASA
AGGPGGPGGP GGSGRSRNGG RDPNAVARAK KRKRANMLIA SFAVLIMFAG LGVVGFTYFS
TGVVLPDQIP LPQSTTVYTS DGKGLVAKLG NENRTLITTS QMPQHVRDAV AAAEDRNFYR
HSGVDYKGIA RAAWNNFTGG DRQGASTITQ QYARNAYESL EDDTYARKVR EAIFASKLND
QFSKDKIMEN YLNVIYFGRG AYGVEAAAQT FFGKAASKLT VGEGAVLAGL IKQPEKTATH
NGYDPAVSPD DAKSRWDYVL DGMVAEGWLD AAERPTEYPE VKPLAEGGNG FGVATPRGNV
INYVRAEMEQ WGLCTNTGAG TEGKPSCGDA LRKGGYKITT TIDNRMQTAM EKAARAGVKG
SVLDGQPDNL MAAGVAVDPK TGRVLAYYGG ESGADIDYAG KNTLGGVLTG GHPPASSFKV
YTLAAAIEAG ISVNSRWDAT PFTPEGYESR IWNAGRDVSK TCNKSCTLDE STVRSYNVPF
FHVAEQIGPD KVVSMARQAG ITTMWDDDRE PFNLLAEKPE DLAPEYFDRV VGYGQYAVTV
LDHANGLATL ANDGVFHKAH FVLKVEQKDE KTGEWKVVSG TGEKLDGQQR IRKGVADEVT
AVLKQIPSRT DNALSGSRPA AGKTGTWELD GTDKHEHAWM VGYDDNLATA IWIGSHNTEE
PAIVDKNNRN IGGSGLPAAL WKRFMDEALD GAPKSDLPRI TGAGDDKAGN GELPEEPKSD
CNALFDVFCN NDGNNNNDDG NNNNGGGDNN GGGDNNGGGN NNGGGNNNNG GGNNNGGDTG
LPPPSNGGTG RPGRD