| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_4494 |
|---|
| Symbol | |
|---|
| ID | 5060984 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 5085026 |
|---|
| End bp | 5085778 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640476761 |
|---|
| Product | LytTr DNA-binding region |
|---|
| Protein accession | YP_001161300 |
|---|
| Protein GI | 145597003 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3279] Response regulator of the LytR/AlgR family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.0706486 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.304613 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGATCGGGT TCCTCCGGGT CCTGGCGGTC GACGACGAGC CACCGGCCCT CGACGAACTG
GCGTACCACC TGCGAGCTGA CCCTCGGGTC GCCCGGCTGC ACACCGCCGG TGACGCCACC
GAGGCGTTGC GGGTGCTCCG CGACGGGGAC GTGGACGCGG TTTTCCTCGA TATCCGAATG
CCGGGCCTGG ACGGTATGGA GCTGGCCCGG GTACTGCGAC GCTTCGCCCG GCCGCCGGCC
ATCGTCTTCG TCACCGCCTA CGACGATGGC GCGGTGGACG CGTTCGACCT GGGCGCCATC
GATTACGTCC GCAAACCCGT CCGGGCCGAG CGGCTGGCCG AGTCGCTGCG CCGGGTGATC
GGCTCGCGGC GGGTACCCAC GCAACTGGCG ACGCCGACCC GGGAGGAGGA TCCGGCGATC
CCGGTCGAGC TCGCCGGGAC GACCCGGATG CTGCCCCGTT CGGCGGTGCG CTGGGTGGAG
GCGCAGGGTG ACTACGTGCG ATTGCACACC ACAGACGGTT CCCACCTGGT CCGGGTGTCC
CTGGCGACCC TGGCCGAGCG GTGGGCGGAC GCCGGTTTCG TCCGAATCCA CCGGTCCTAC
CTCGTCCAGT TACGGCTCAT CGCGGAGCTA CGGCTGGCGC ACTCCGGCTA CGTGGTGGTG
GTCGGCTCGA CCGAGTTGCC GGTCAGTAGG CGGCACACCC GCGAGCTGAA GGAGAAGCTG
ATCCGAACAG CCAAGCAGGG CTGGGCCCGC TGA
|
|---|
| Protein sequence | MIGFLRVLAV DDEPPALDEL AYHLRADPRV ARLHTAGDAT EALRVLRDGD VDAVFLDIRM
PGLDGMELAR VLRRFARPPA IVFVTAYDDG AVDAFDLGAI DYVRKPVRAE RLAESLRRVI
GSRRVPTQLA TPTREEDPAI PVELAGTTRM LPRSAVRWVE AQGDYVRLHT TDGSHLVRVS
LATLAERWAD AGFVRIHRSY LVQLRLIAEL RLAHSGYVVV VGSTELPVSR RHTRELKEKL
IRTAKQGWAR
|
|---|
| |