Gene Strop_4491 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagStrop_4491 
Symbol 
ID5060981 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora tropica CNB-440 
KingdomBacteria 
Replicon accessionNC_009380 
Strand
Start bp5081038 
End bp5081898 
Gene Length861 bp 
Protein Length286 aa 
Translation table11 
GC content70% 
IMG OID640476758 
ProductDNA-(apurinic or apyrimidinic site) lyase 
Protein accessionYP_001161297 
Protein GI145597000 
COG category[L] Replication, recombination and repair 
COG ID[COG0266] Formamidopyrimidine-DNA glycosylase 
TIGRFAM ID[TIGR00577] formamidopyrimidine-DNA glycosylase (fpg) 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.20817 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCCCGAAC TACCAGAGGT GGAGGCGCTC ACCGTCTACC TGCGCCAACG CGCCGTCGGC 
CGACGGGTCG ACCGGCTGGA GATCTCGGCG ATCAACGCCC TGAAGACGTA CGACCCGGCG
ATCACGGCCG CGGCCGGCCA ACCGGTCGTC CACGCCCAGC GACACGGCAA GTTCCTCGAC
CTGGTGCTCG GCGCTGACCT GCACCTGGTC GTTCACCTGG CCCGCGCCGG CTGGCTGCAC
TTCCGGGAGG AGTTCTCGTC CCGCACCCCG CTGCGCCCCG GCAAGGGCCC GGTGGCGCTG
CGGGCCCGTC TCGACGACGG CTCCGGGTTC GACCTGACCG AGGCCGGCAC CCAGAAGAGT
CTCGCCGTCT ACCTGGTGAC CGATCCGGCG ACGGTGCCCG GGGTGGCCCG ACTTGGTCCG
GACGCGCTCG CCGTGGACCC GGCCACCTTC GCCGACCGGC TCCGTAGCCG CAAGGGTCAG
GTCAAGGGGG TGCTCACCGA TCAGACGGTG CTCGCCGGGG TGGGTAACGC GTACTCTGAT
GAGATCCTGC ACACGGCGCG ACTGTCACCG TTCGCGCTGA CCACCCGGCT GACCGACGAA
CAACTCGCCA CCCTGCACGC GGCCACCCGG GACGTGCTCG GCGACGCGGT GTCCCGATCG
GTGGGGCAAC GGGCCGCGGA GCTCAAGGGC GAGAAGCGCT CCGGCCTGCG GGTGCACGCC
CGAACCGGGT TACCCTGCCC AGTCTGCGGC GACACGGTAC GGGAGGTCTC GTTCGCTGAC
TCCAGCCTCC AGTACTGTCC AGGTTGCCAG ACCGGCGGGA AGCCACTCGC GGACCGACGG
TTGTCTCGAA TTGTACGGTG A
 
Protein sequence
MPELPEVEAL TVYLRQRAVG RRVDRLEISA INALKTYDPA ITAAAGQPVV HAQRHGKFLD 
LVLGADLHLV VHLARAGWLH FREEFSSRTP LRPGKGPVAL RARLDDGSGF DLTEAGTQKS
LAVYLVTDPA TVPGVARLGP DALAVDPATF ADRLRSRKGQ VKGVLTDQTV LAGVGNAYSD
EILHTARLSP FALTTRLTDE QLATLHAATR DVLGDAVSRS VGQRAAELKG EKRSGLRVHA
RTGLPCPVCG DTVREVSFAD SSLQYCPGCQ TGGKPLADRR LSRIVR