| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_4467 |
|---|
| Symbol | |
|---|
| ID | 5060956 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 5059149 |
|---|
| End bp | 5059907 |
|---|
| Gene Length | 759 bp |
|---|
| Protein Length | 252 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640476733 |
|---|
| Product | helix-turn-helix domain-containing protein |
|---|
| Protein accession | YP_001161273 |
|---|
| Protein GI | 145596976 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0353023 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGGGT TCAGTGATCG GGCTGACGCC GTCGTCGAGA TCGAAGCTGT GCCACACCCC
GCGCTCATGG TGATCTTCGA CCTCGGCGAC CAGCCACTTG TCGTCGAGGA CGGCAGTGGC
CAGCAACAGC GAGGTTGTGT CACGGCCGGA CTCGCGCCTC CCCATGGTGC TCGAGGACGA
GGCCAGGCCG GAAGCTTCGC GTGCCTTCAG GTGCGGCTGT CGCCCGTGAT TGCGCACGCG
GTCCTGGGCC CCGTGTTGGG GCTAAGTGGG GCCGTGACAG CCCTCGACGA CCTCTGGGGG
CGCGACGCCG CGCGAATCCA GGAGCGGCTG CGCGCCACCC GATCCTGGGA CGACCGGTTC
GTGATCGCCG AGGTAGCGCT GGCCAGACGC TATGACGCGG GCCGCGCGGT CGATGCGGAA
GTGGCCCTTT GCTGGAGGCG GATGGTGGCC AGCCGTGGAC AGGTGCGGGT CGAGCGGCTG
GCGGCCGAGG TCGGATGGAG CCGTAAACGG CTGTGGGCCC GGTTCCGGTC CCAGATCGGT
CTCACCCCCA AGCGCGCCGC CCAACTCATC CGGTTCGACC ATGCGGCTCA TCGCCTCGCC
GCGGGCCACG GCGCGGCAGA GGTGGCGGCG GACAGCGGCT ACGCCGACCA GTCCCACCTA
CATCGCGACG TCATGACCTT CACCGGAGCG ACGCCGGCGA CCGTGGCAAG CGCCCCGTTC
CTCGCCGTTG ACGATGTCGC CTGGCCAGCC CAGCCCTGA
|
|---|
| Protein sequence | MAGFSDRADA VVEIEAVPHP ALMVIFDLGD QPLVVEDGSG QQQRGCVTAG LAPPHGARGR
GQAGSFACLQ VRLSPVIAHA VLGPVLGLSG AVTALDDLWG RDAARIQERL RATRSWDDRF
VIAEVALARR YDAGRAVDAE VALCWRRMVA SRGQVRVERL AAEVGWSRKR LWARFRSQIG
LTPKRAAQLI RFDHAAHRLA AGHGAAEVAA DSGYADQSHL HRDVMTFTGA TPATVASAPF
LAVDDVAWPA QP
|
|---|
| |