Gene Strop_4374 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagStrop_4374 
Symbol 
ID5060860 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora tropica CNB-440 
KingdomBacteria 
Replicon accessionNC_009380 
Strand
Start bp4951026 
End bp4952426 
Gene Length1401 bp 
Protein Length466 aa 
Translation table11 
GC content60% 
IMG OID640476637 
Productglutamate decarboxylase 
Protein accessionYP_001161180 
Protein GI145596883 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0076] Glutamate decarboxylase and related PLP-dependent proteins 
TIGRFAM ID[TIGR01788] glutamate decarboxylase 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.777962 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGAACA CGCGGCGACC TGTGGATTCT GCCGAGGCGG ACGTGGTCGA AGTGAATCCG 
CTGTTCGCGC GTCCGGGTGA GTCGACCGAG CTTGCTCGAT TCTCGATTCC AGACTGTGAG
TCACTGCCGG AAACCGCATA CCAGATCGTG CACGACGAGG TGGCGCTCGA CGGCAACGCG
CGGCTGAACC TAGCGACTTT TGTCGGCACC TGGATGGACA GTCACGCCGA AAAGCTGTAC
GCCGACACCT TCGACAAGAA TTTGATCGAC AAAGACGAAT ACAAGGCTAC GGACGCAATA
GAGGAACGGT GTCGGATCAT CCTGGCGGAT CTCTGGCATG CGCCGGAACC CCGGAATACC
ATCGGCGCGT CCACGATCGG TTCGTCTGAG GCGTGCATGC TGGGAGGGTT GGCGCTCAAG
CGTCGCTGGC AGCATGCGCG TCGTAGTGTC GGAAAGTCGA GCGAACGTCC CAATCTGGTG
ATGTCGAGCG CAGTGCAGGT GTGTTGGAAG AAGTTCTGTA GCTACTGGGA CGTGGAAGCG
CGAATCGTGT CGATCTCCGA GGAGCGCAAG GTGCTCGACG GTCACGATCT TCGGTCGTAC
GTGGACGAGA ACACGATCGG CGTCGTGGCG GTGTTTGGCG TGACATACAC CGGAATGTAT
GAGCCGGTGG AGCGGATCGC GGCGGCGCTG GACGAGATCC AGGCTTCGAA AGGTCTGGAT
ATCCCTATCC ATGTCGACGG AGCTACCGGC GCATTCGTGG CGCCCTTCAT TCAACCCCAC
ATCACTTGGG ACTTTCGCAT CAGTAGGGTC GCGTCGATTA ATGTTTCGAG CCACAAGTAC
GGGCTGGTCT ACCCGGGTCT GGGATGGATT GTTTGGCGGG ATCAGGCGGC GCTGCCCGAG
GACCTGCGGT TCCGGGTGGC CTACCTGGGT GGCGAGACGC CGACTGTCGG GTTGAGTTTC
ACCCGACCGG GGGCTCAGGT GTTACTGCAG TACTACTTGT TCCTGCGCCT CGGCCGGGAC
GGCTATCAGC GGGTGCATCA GGCCACACAA GACGTGGCAC AGTACCTGTC CCGGGAGATC
GCCAAAATGC CGCAGTTCGA GCTGTGGAGT GACGGCAGTG ACCTTCCGGT GCTGACGTGG
CATCTTCGAA AGGGGCGTTC CTATAACTGG AACCAGTATC ATCTGTCCGA TCGATTGCGT
ATGAAAGGGT GGCAGGTCCC CACGTACCCG ATGCCCGACG ACCTAACTCA CCTCACCGTT
CAGCGGATCG TGGTCCGCGG CGGTCTCAGC CGCGACCTCG CCGGGGCGTT AGTCGCCGAT
CTCCATGCAG AGGTAGGATT TCTCGAATCC CTAACTGCTC CTATCGAGGC TTTGGGTGAG
CGACCCGGGT TCCATCACTG A
 
Protein sequence
MSNTRRPVDS AEADVVEVNP LFARPGESTE LARFSIPDCE SLPETAYQIV HDEVALDGNA 
RLNLATFVGT WMDSHAEKLY ADTFDKNLID KDEYKATDAI EERCRIILAD LWHAPEPRNT
IGASTIGSSE ACMLGGLALK RRWQHARRSV GKSSERPNLV MSSAVQVCWK KFCSYWDVEA
RIVSISEERK VLDGHDLRSY VDENTIGVVA VFGVTYTGMY EPVERIAAAL DEIQASKGLD
IPIHVDGATG AFVAPFIQPH ITWDFRISRV ASINVSSHKY GLVYPGLGWI VWRDQAALPE
DLRFRVAYLG GETPTVGLSF TRPGAQVLLQ YYLFLRLGRD GYQRVHQATQ DVAQYLSREI
AKMPQFELWS DGSDLPVLTW HLRKGRSYNW NQYHLSDRLR MKGWQVPTYP MPDDLTHLTV
QRIVVRGGLS RDLAGALVAD LHAEVGFLES LTAPIEALGE RPGFHH