Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Strop_4103 |
Symbol | |
ID | 5060585 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora tropica CNB-440 |
Kingdom | Bacteria |
Replicon accession | NC_009380 |
Strand | - |
Start bp | 4662437 |
End bp | 4665976 |
Gene Length | 3540 bp |
Protein Length | 1179 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640476364 |
Product | ATPase domain-containing protein |
Protein accession | YP_001160911 |
Protein GI | 145596614 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.972573 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACCACGG CGAAGCAGCC GGCAGCGGAG CTGTCCGCGC CGGACCCCGA TGCGGTCCTC ATCGAGCTGA CCGAGGCGCT TCGGCGCGTT CGCCAGGGCG ATCTCAAGGT GCGGCTGCCG CACCGGTCGG GCCGGGCGGG CGAGTTGGCG GACGCCTTCA ACGAGGTGGT GTCGCTCCAG GAACGGCAGC ACCACGACCT GCGCCGGATC AGCCGGATCG TGGGCCGGGA CGGACGACTC ACCGAACGCC TCGACGACGA GGACCTGGAT GGCTCCTGGG CGGAGGGGCA GCAGGCGGTC AATTCGCTCA TCGACGACCT CGGGCGCCCG ACCATCGAGA TCGCTCGGGT GATCGCGGCG GTCGCCGCGG GCGACCTCTC GCAGCACATG GCGCTGGAGC TGGATGACCG ACCGCTGCGT GGGGAGTATC TGCGTATCGG GCGCACGGTG AACACCGTGG TCGACCAGTT GTCGTCGTAC GCCGATGAGG TGACCCGGGT GGCTCGGGAG GTGGGTACCG AGGGGAAGCT GGGTGGTCAG GCCGATGTCC GGGGTGCCGC GGGCACCTGG AAGGACCTGA TCGACTCGGT GAACACCATG GGGTCGAACC TGACCGCACA GGTCCGCAAC ATCTCGCAGG TGTCGACGGC GGTCGCGACG GGTGATCTGG GGCAGAAGAT CACGGTTGAT GCGCAGGGCG AGATCCTGGA GTTGAAGAAC ACCGTCAACA CGATGGTGGA TCAGTTGTCG TCGTTCGCCG ACGAGGTGAC CCGGGTGGCT CGGGAGGTCG GCATCGACGG GAAGCTGGGT GGTCAGGCTC AGGTGCGGGG CGTCTCCGGG ACGTGGCGGG ACCTCACCGA GAACGTCAAC CAACTCGCCG GCAATCTGAC CAGCCAGGTC CGCAACATCT CGCAGGTGTC GACGGCGGTC GCGCGGGGTG ATCTGGGGCA GAAGATCACG GTTGATGCGC AGGGCGAGAT CCTGGAGTTG AAGAACACCG TCAACACGAT GGTGGATCAG TTGTCGTCGT TCGCCGACGA GGTGACCCGG GTGGCTCGGG AGGTGGGTAC CGAGGGGAAG CTGGGTGGTC AGGCTCAGGT GAAGGGTGTC TCCGGGACGT GGCGGGACCT GACGGACAAC GTGAACTCGA TGGCGTCGAA CCTGACCTCG CAGGTGCGCA ACATCGCCTC GGTCACGACT GCCGTCGCGC GGGGTGATCT GGGGCAGAAG ATCACGGTTG ATGCGCAGGG CGAGATCCTG GAGTTGAAGA ACACCGTCAA CACGATGGTG GATCAGTTGT CGTCGTTCGC CGACGAGGTG ACCCGGGTGG CTCGGGAGGT GGGTACCGAG GGGAAGCTGG GCGGTCAGGC TCAGGTGAAG GGCGTCGCCG GGACGTGGCG GGACCTCACC GAGAACGTCA ACCAGCTCGC CTCCACCCTG ACCATTCAGC TGCGCGCCAT CGCCGAGGTC TCCACGTCGG TGACCCGGGG CGATCTGACC CAGCAGATCG CGGTCGAGGC GCAGGGGGAG GTCGCCGAGC TGACCGACAA CATCAACCAG ATGATCGTCA CCCTCCGGGA GACGACCACG GTGAACGCCG AGCAGGGCTG GCTGGACTCC AACCTGGCCC GCATCGGTGG GCTGCTGCAG GGGCAGCGGG ATCTCGGCGA GGTCTGCCGC ATGATCATGA TGGAGGTGAC TCCGCTGGTG GACGCGCAGC TCGGCGCGTT CTTCCTGGTG GATGACGCTG GGGGCAACTT CCGACTACGG CTCACCGCCT CGTATGGCTA CGTCGCTCGT GGGCAGGACG TGACGTTCGG CCCCGGTGAG GGCCTGGTCG GCCAGGTCGC GCTGTCCCGG CGCACGATTC GGGTCAGCGG ACCGGCGGAG AGCCGGCTCC GGCTCCGTTC CGGGCTCGCG GACACCCCGC CGGCCGACCT GGTGGTGCTG CCGGTCATCT TCGAGGGCGA GCTGCTCGGT GTGATCGAGT TCGCCAGCGT GACCGCGCTC TCCGACCTGT ATCTCTCCTT CCTGGAGCGG CTCGTCCTCA CCATCGGCGT CGCGGTCAAC ACCATCCAGG CGAACCGGCG TACCGAGGAG CTGCTGGCCC AGTCGCAGCG GCTGGCCCAC GAGTTGCAGG AGCAGTCGGC CGAACTCCAG CGTACGAATG CGGAACTGGA GGAGAAGGCG AAGCTCCTCT CCGAGCAGAA GGGCAACATC GAGACCAAGA ACCGGGAGGT CGAGCTGGCC CGACTGGGCT TGGAGGAGAC GGCGCAGCAG CTCACCCGCG CCTCGGCGTA CAAGTCGGAG TTCCTGGCCA ACATGAGCCA CGAGCTGCGT ACGCCGCTGA ACTCGCTGCT GCTGCTGGCC CGGCTGCTGG TCCAGAACCC GGAGCAGAAC CTCAGCCCGA AGCAGATCGA GTTTGCCCGG ACGATCCACA ACGCCGGAAC GGACCTGCTC TCGCTGATCG ACGATATTCT TGACCTCTCC AAGATCGAAG CTGGCCGGAC GGACGTCGAG CCAACCGAGA TTCAGTTCAC CGAGATCCGC GGCTATGTCG AGCAGGCGTT CGCCCCGCAG GCGGAGGAGA AGGGCCTCGA CTTCGAGGTC CGGATCAGTC CGGAGCTGCC GAAGGAGATC GTCACCGACG TGCAGCTGCT GCAGCAGATC CTGCGGAACC TGCTTTCCAA CGCGATGAAG TTCACCGACG CCGGGGCGGT GCGGTTGGGG ATCGCCCCCG CGTCGGAGTC GGCTGTCTTC GACGTGCCCG CGTTGACCAA CGCGCGGCAG GTGGTCGCCT TCACCGTCGT GGACACCGGG ATCGGCATTT CCGACGACAA GCTGTCGATC ATTTTTGAGG CGTTCCAGCA GGCTGACGGG ACGACCAGCC GTCGGTACGG GGGGACCGGC CTGGGCCTGT CGATCAGTCG CGACCTGGCC CGGCTGCTGG GTGGCGCGAT CGGTGTGTCG TCGGTGCCCG GGCAGGGTTC GACCTTCACC CTCTTCCTTC CCGACGTCCT GGCCCCGGAC GCGGTCGTGG CGCCGGCTCC GCCCTCACCC GCCCGGGCTG GCCTCCCGTC GTCGCTACTG ATGCCCGCTG TGGAGTTGCT GCCCACCACC GCCGAGGCGA CGGCGACCCG CCAGCTGTCC GGTGCCACCG TGCTGATCGT GGACGACGAC GTGCGTACCG TGTTTGCCCT GACCAGCGCC TTGGAGCTAC ACGGGATGAC CGTGCTGTAC GCGGACAACG GGGCCGACGG CGTACGCCTG CTGGCCGAGC ATCCGGAGGC GGACATCGTG CTGATGGATG CCATGATCCC GGATCAGGAC GGATACGAGA CGACGCGGCA GATCCGGCGT AACCACCGCT TCGCCGACCT CCCGATCGTC TTCCTGACCG CGAAGGCGAT GCCCGGTGAC CGGGAATCCG CGCTCGCGGC CGGGGGTAGC GGATACATCA CCAAACCTGT CGATCTGGAC GAGTTGATCG AGCTCATCTC GTCCTGGATC AGCGGAGGTC GGAGCGAGGA GAGCCCGTGA
|
Protein sequence | MTTAKQPAAE LSAPDPDAVL IELTEALRRV RQGDLKVRLP HRSGRAGELA DAFNEVVSLQ ERQHHDLRRI SRIVGRDGRL TERLDDEDLD GSWAEGQQAV NSLIDDLGRP TIEIARVIAA VAAGDLSQHM ALELDDRPLR GEYLRIGRTV NTVVDQLSSY ADEVTRVARE VGTEGKLGGQ ADVRGAAGTW KDLIDSVNTM GSNLTAQVRN ISQVSTAVAT GDLGQKITVD AQGEILELKN TVNTMVDQLS SFADEVTRVA REVGIDGKLG GQAQVRGVSG TWRDLTENVN QLAGNLTSQV RNISQVSTAV ARGDLGQKIT VDAQGEILEL KNTVNTMVDQ LSSFADEVTR VAREVGTEGK LGGQAQVKGV SGTWRDLTDN VNSMASNLTS QVRNIASVTT AVARGDLGQK ITVDAQGEIL ELKNTVNTMV DQLSSFADEV TRVAREVGTE GKLGGQAQVK GVAGTWRDLT ENVNQLASTL TIQLRAIAEV STSVTRGDLT QQIAVEAQGE VAELTDNINQ MIVTLRETTT VNAEQGWLDS NLARIGGLLQ GQRDLGEVCR MIMMEVTPLV DAQLGAFFLV DDAGGNFRLR LTASYGYVAR GQDVTFGPGE GLVGQVALSR RTIRVSGPAE SRLRLRSGLA DTPPADLVVL PVIFEGELLG VIEFASVTAL SDLYLSFLER LVLTIGVAVN TIQANRRTEE LLAQSQRLAH ELQEQSAELQ RTNAELEEKA KLLSEQKGNI ETKNREVELA RLGLEETAQQ LTRASAYKSE FLANMSHELR TPLNSLLLLA RLLVQNPEQN LSPKQIEFAR TIHNAGTDLL SLIDDILDLS KIEAGRTDVE PTEIQFTEIR GYVEQAFAPQ AEEKGLDFEV RISPELPKEI VTDVQLLQQI LRNLLSNAMK FTDAGAVRLG IAPASESAVF DVPALTNARQ VVAFTVVDTG IGISDDKLSI IFEAFQQADG TTSRRYGGTG LGLSISRDLA RLLGGAIGVS SVPGQGSTFT LFLPDVLAPD AVVAPAPPSP ARAGLPSSLL MPAVELLPTT AEATATRQLS GATVLIVDDD VRTVFALTSA LELHGMTVLY ADNGADGVRL LAEHPEADIV LMDAMIPDQD GYETTRQIRR NHRFADLPIV FLTAKAMPGD RESALAAGGS GYITKPVDLD ELIELISSWI SGGRSEESP
|
| |