| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_3975 |
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| Symbol | |
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| ID | 5060456 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salinispora tropica CNB-440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009380 |
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| Strand | + |
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| Start bp | 4526755 |
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| End bp | 4528443 |
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| Gene Length | 1689 bp |
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| Protein Length | 562 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 640476235 |
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| Product | rfaE bifunctional protein |
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| Protein accession | YP_001160783 |
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| Protein GI | 145596486 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2870] ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase |
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| TIGRFAM ID | [TIGR00125] cytidyltransferase-related domain
[TIGR02198] rfaE bifunctional protein, domain I
[TIGR02199] rfaE bifunctional protein, domain II |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGGAG CAGCAGCGGA ACAGCACCGA CTCGCCGCCG TGGTGGAGAG CTGGCTGGGA
CGCCCCGTCC TGGTCGTCGG GGACGCCATG CTCGACGAGT GGCGGTTCGC CGACTCGGAT
CGGCTCTGCC GGGAGGCGCC GGCCCCGATC CTCACGCTAC GCCGCCGGAT CTCCGCCGCG
GGCGGTGCGG CGAACACCGC CGTCAACATC GCCGCGCTCG GCGGACGGGC CGCGCTGGTC
GCCCCGATCG GCGCGGACGT GGCCGGCGAC GAGGTGCACG ACTGCCTGGA CCGGGCCGGC
GTGTGGGACC GCACGGTCAG CCAACCGAAC CGCCCGACCC CGGTCAAGCG GCGGATGCTC
GCCGGCAGCC AGATCCTGCT GCGGGAGGAC TCCGGTGGTC CCGCGGAGCC CCTGGACGAC
GCCGGAGTAG CTCGGCTGCT CGATGCCCTC ACCTGCGCAA CCGCGGAGCT GCACGCGGCG
GGCGGCGCGG CACCGACCCT GGTGGTCTGC GACTACGCGC TGGGGGCCCT GCCCGCACCG
GTGCGTGCGT GGCTGGTCGC CAACCGGGAG CGGTACGCGA CGGTCGCGTT GGACGCGCAT
GACCTTGCCG ACTGGCGTGG GCTCGCCCCG ACCGTGGTCA CTCCGAGCTT CGCCGAGGCC
AGCCGGCTGC TCGCCCGCAC CGCGACCTGC CCCACGGGCG GAGACCTGCA CCTGGACCAC
CTGGACGGCG CCCTCGCCGA CGGCCCCTCC GAGCTGACCG TGGGCGTCGC GCCCGGCGAT
GGTCGGGTCG CCGACGCTGA CGAGGGCACC GGCCCCGAGA CGAGCGGGGA CGCCGCCGAC
GCGGGGTTGG ACCGGGCGGT GCTCGCCGAA TCCCGCCTGG CGGAGCTGCG GCAGCACACC
GGCGCGGATG TCGTGGCGGT AACGCTGGAC ACCGAGGGCG CGGTCGTCGC CGGCTCGGAC
GGCGAGTCCA GCCGTAGCCA CAGCAACCCG ATGCCGGCCA GCCACACCGT GGGAGCCGGA
GACGCCTACC TGGCGGCGAT GACCCTCGCC CTGGCCGCCG ACGCTCCCCT ACCGACCGCC
GCGCAGCTCG CCCAGCTCGC GGCCACCATC ACCGTCTCCG ACACCGGTAC CTGTGTCTGC
CGGCGGGAGG ACCTGCTCAC CGCGCTCGAC CGTACCGATG CCGGCGGCCG GCCGACCCTC
GTCGACGCCG ACGAGCTGGC GACCATCGCC GGGGCACACC GCCGCGCGGG TCGCTCGGTC
GTCTTCACCA ACGGGTGCTT CGATGTCCTG CATCCGGGAC ACGTGCGTTA CCTGGAGCAG
GCCCGCGCCC TCGGTGACCT GCTCGTGGTG GCGGTCAACG CCGACGGCAG CGTCCGCCGG
CTCAAGGGCG CGGACCGCCC GGTCAACCCG GTCGAGGACC GGGTGGCCCT GCTGGCGGCG
CTGACCCACG TTGACCATGT GGTGGTCTTC GAGGAGGACT CGCCCGCCCG GCTCATCGAG
GCCATCCGGC CGGACATCTA CGTCAAGGGC GGGGACTACC CGCCGGAGTT GGTGCCGGAG
GCGCCCCTGG TGCGCCGGCT CGGTGGTCAG GTCCGCACCC TCGGCTACGT GCCGGACCGC
TCCACTTCGG CGATCATCGA CCGGATCCGG GCGTACGGCG GCAGCGCATC GGTGGCGGGG
CAGGCGTGA
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| Protein sequence | MAGAAAEQHR LAAVVESWLG RPVLVVGDAM LDEWRFADSD RLCREAPAPI LTLRRRISAA
GGAANTAVNI AALGGRAALV APIGADVAGD EVHDCLDRAG VWDRTVSQPN RPTPVKRRML
AGSQILLRED SGGPAEPLDD AGVARLLDAL TCATAELHAA GGAAPTLVVC DYALGALPAP
VRAWLVANRE RYATVALDAH DLADWRGLAP TVVTPSFAEA SRLLARTATC PTGGDLHLDH
LDGALADGPS ELTVGVAPGD GRVADADEGT GPETSGDAAD AGLDRAVLAE SRLAELRQHT
GADVVAVTLD TEGAVVAGSD GESSRSHSNP MPASHTVGAG DAYLAAMTLA LAADAPLPTA
AQLAQLAATI TVSDTGTCVC RREDLLTALD RTDAGGRPTL VDADELATIA GAHRRAGRSV
VFTNGCFDVL HPGHVRYLEQ ARALGDLLVV AVNADGSVRR LKGADRPVNP VEDRVALLAA
LTHVDHVVVF EEDSPARLIE AIRPDIYVKG GDYPPELVPE APLVRRLGGQ VRTLGYVPDR
STSAIIDRIR AYGGSASVAG QA
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