| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_3684 |
|---|
| Symbol | |
|---|
| ID | 5060160 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 4223965 |
|---|
| End bp | 4225521 |
|---|
| Gene Length | 1557 bp |
|---|
| Protein Length | 518 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640475940 |
|---|
| Product | peptidase S1 and S6, chymotrypsin/Hap |
|---|
| Protein accession | YP_001160493 |
|---|
| Protein GI | 145596196 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.358044 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACT ACGAGTCCGA CCCGCAGCGT CGGCAGGCCC CCGGGGACGC CGAGCCGTCG
CACCCCACTG TCGACCTGTC TCGCCTCGAG CGCGCCCAGT CCGACTCTTC GGCCGCTACC
TCCGGTGCGG ACAGTAGCTT CGCGCCGCCT GCCGACACCA CGACCGGCCC CACTGAGGCG
TTGCCGGTCT CGGCTTCGGG CGCCTCGCCG TCGGCTGACC CCACTGAGGC GTTGCCGGTC
TCGGCTTCGG GCGCCTCGCC GTCGGCTGAC CCCACTGAGG CGCTCGCCCC CCAGCTCGGC
GCCGCGCCCG TCGCCGGCCC GGCCGGTGGC CACCCCTACC CACCCGGCTA CTCGCCACAA
CACCCCGGTG CTCCCTGGTA CGGGCCGCGG TCCACCGCCT GGAGCGGAGG GCAGCCAGGC
GGGTACGGAG CCCCGTTCTA CCCGGGTCAG CCGGCGCAGC TGGCCGGACA GCCCGCGCCA
CCGTGGGCGG CGCCGCAAAC CGGTCCGCAT CCGGGCAGCC GGATCGCGAA GTTCATCGGC
GCGGGCGTCG CGGTGCTCGC CCTGATGTTC GGCTCCGGTG TCGCCGGCGG CGCGCTCGCA
CTCGCCCTGA ATGACGGCTC CGGCGTCACG CGCACCTACT CCGCGGCCCC GATCATCGAC
AGCGCCGACC TGCCGCGGAT CGCCGCCGCG GTGCAGCCCA GCGTGGTGTC GATCGGCACC
GACAGCGGCG GGGGCTCGGG CGTGATCCTC ACCGCCGACG GATATGTGCT GACCAACAAC
CACGTGATCG CCACGGCCAG CGGCGACACC GTGCTGGTGA CCTTCGCCGA CGGCGAGACG
GCGTCGGCGG AGATCACCGG CACCGACCCC AAGACCGACC TGGCGGTGGT GAAGGCCGCC
GGGGTCAGCG ACCTGACGCC GGCGGAATTC GGCGACAGCG ACGCGATGCA GGTCGGCGAC
CAGGTTCTCG CCCTCGGTAG TCCACTGGGC CTGCAGGGGT CGGTGACCGC CGGCATCCTC
AGCGCGCGGG ACCGCACCAT CCAGGCCGGC AGCTCGGAGC AGGACCCGAC GGCGGGGGTC
ACCTCGATCT CGGGGCTGTT GCAGACCGAC GCGCCGATCA ACCCGGGCAA CTCCGGTGGG
GCGCTGGTCA ACACCCGGGG CGAGGTGATC GGGATCAACA CCGCGATCGC CACCAGTGGC
CAGGGCAGCA CCGGCAACAT CGGGGTCGGG TTCGCCATCC CCAGCAACAA GGCCGAGGAC
GTCGCCGAGA AGCTGCAACG GGGTGAGAAG GTCAGCCATC CCACCCTCGG TGTCAGCGTC
ACCGCCGCCG AGGGCGGCGG TGCCCTGGTG GCCGCGGTCC TCCCCGACAG CGCTGCCGAG
CGGGCGGGCT TCCAGCAGGG CGACGTCATC ACTCGGTTCG GCGACAAGGT GATCGCTGAC
TCCGAGGATC TGGTCGCCGT GGTCCAGGCC GGCAAGGTGG GCGACCGGGT GGATGTGACA
TACAAGCGCA ACAATGTTGA AGCGACCGCA ACCGTGACGC TCGCCGAAGC GTCCTAA
|
|---|
| Protein sequence | MTDYESDPQR RQAPGDAEPS HPTVDLSRLE RAQSDSSAAT SGADSSFAPP ADTTTGPTEA
LPVSASGASP SADPTEALPV SASGASPSAD PTEALAPQLG AAPVAGPAGG HPYPPGYSPQ
HPGAPWYGPR STAWSGGQPG GYGAPFYPGQ PAQLAGQPAP PWAAPQTGPH PGSRIAKFIG
AGVAVLALMF GSGVAGGALA LALNDGSGVT RTYSAAPIID SADLPRIAAA VQPSVVSIGT
DSGGGSGVIL TADGYVLTNN HVIATASGDT VLVTFADGET ASAEITGTDP KTDLAVVKAA
GVSDLTPAEF GDSDAMQVGD QVLALGSPLG LQGSVTAGIL SARDRTIQAG SSEQDPTAGV
TSISGLLQTD APINPGNSGG ALVNTRGEVI GINTAIATSG QGSTGNIGVG FAIPSNKAED
VAEKLQRGEK VSHPTLGVSV TAAEGGGALV AAVLPDSAAE RAGFQQGDVI TRFGDKVIAD
SEDLVAVVQA GKVGDRVDVT YKRNNVEATA TVTLAEAS
|
|---|
| |