| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_3426 |
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| Symbol | |
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| ID | 5059895 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salinispora tropica CNB-440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009380 |
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| Strand | - |
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| Start bp | 3930964 |
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| End bp | 3932559 |
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| Gene Length | 1596 bp |
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| Protein Length | 531 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640475675 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_001160235 |
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| Protein GI | 145595938 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.0758867 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.343027 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCGGAC AGGCGGGGCG GCGACCCGCC CACGAGAGCG TGGACCGGTT GCTGCTGGGT
CTCGCTGTCG GCGGGGTGCT GGCCATCGTG GTCTGGGGCA TCCTGGCGTC GGAGTCGATC
TCCGCGGTCG GTGAGACCGG GCTGACCTGG GTCATCACCA CGTTTGGCTG GTTGTTCGTC
GTGGCGGCGA ACACCTTCCT GGTACTGACC TTCGTGCTGG CGTTCTCCCG GCTCGGCACC
ATTCGGTTGG GCGCCGACAC CGAGCGACCG GAGTTCAGCA ACCTGGCCTG GATCGCCATG
ATGTTCAGCG CCGGTATGGG GATCGGCCTG GTCTTCTTCG CCGTGGCCGA GCCGATCCAG
CACTATGCGT CGCCGCCGCC GGCCACCGGA ACCGAGCCGG AGACCGGCAC CGCCGCCTCG
GTCGCCATGC AGTTCACCCT CTTCCACTGG ACGCTGCACC CATGGGCGAT CTACGCCATA
GTGGCACTCG CCCTGGCGTA CTCGACCTTC CGCAAGGGGC GGGAGAACCG AATCTCGGCG
GTGTTCCGCC CGGTGCTCGG CCCCCGGGCC GGGGGTACGG TCGGGCGCTT GATCGACCTG
CTGGCGGTCT TCGCCACCGT CTTCGGCTCG GCGACCAGCC TCGGCCTCGG CGCGCTCCAG
GTCGCCGCGG GCCTGGACCG GGTCGTCGGG GTTCCCAACA CCAGGGCGGT GGAGCTGGTA
GTGATCGGGG CGTTGACCCT GGCCTTCGTC GTCTCGGCCT TCTCCGGGCT GTACCGGGGC
ATCAAGTGGC TGTCCACCAC CAACGTGGTG CTGGCGGTGT TGTTGATGCT CTTCGTCTTC
GTGGTCGGCC CGACGGTCTA CGTCCTCGAT GTGCTGCCCG CCTCGATCGG CGACTACCTC
AGCAACCTGG TCTTCATGTC GACCCGAACC GGTGCCTTCT CCGAGCCGTC CTGGCTGGGC
TCCTGGACGG TCTTCTACTG GGCGTGGTGG ATCTCCTGGG CGCCGTTCGT CGGCACCTTC
ATCGCCCGCA TCTCCCGGGG CCGTACGGTG CGGCAGTTCC TGATCGGCGT GCTGCTGGTG
CCGAGCGGAG CCAGCGTGGT CTGGTTCGCG GTGCTGGGCG GCAGCGCGCT GCGGGTGCAG
GCCACCGGGG GCGCGGACCT GGTCGCCGAG ACCGCCGCCG GGAGCGAGGA GGCGCTCTTC
GGGCTGCTCG AGGCGCTGCC GCTGGGGGCG TTGACCAGCG CGCTGGCCAT AACGCTGGTG
ACGCTGTACT TCGTCACCAG CGCCGACTCC GCCTCCCTCG TGCTCGCGTC GCTGACCTCC
CGGGGCGCGC TGCGCCCGCG CCGGGTGCTC GTCGTCGCCT GGGGCGTGCT GATCGGTGCC
ACCGCCGCGG TGCTGCTGCT GGCCGGGGAG CTGAGTGCGC TCCAGCAGGC GACGATCATG
GTTGCGTTGC CGTTCGTGGT GGTGATGCTC GGCCTTGCCT GGTCACTGGT CAAAGAGTTG
CTCCAGGACC CGGTGGTGCG GGCACGCCCG CCGCACGGGC ACGGGTTGGC CGAGGCCCTC
CACCACGCCC GCTCGACCGA GGAGGAGCAG GAGTAG
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| Protein sequence | MGGQAGRRPA HESVDRLLLG LAVGGVLAIV VWGILASESI SAVGETGLTW VITTFGWLFV
VAANTFLVLT FVLAFSRLGT IRLGADTERP EFSNLAWIAM MFSAGMGIGL VFFAVAEPIQ
HYASPPPATG TEPETGTAAS VAMQFTLFHW TLHPWAIYAI VALALAYSTF RKGRENRISA
VFRPVLGPRA GGTVGRLIDL LAVFATVFGS ATSLGLGALQ VAAGLDRVVG VPNTRAVELV
VIGALTLAFV VSAFSGLYRG IKWLSTTNVV LAVLLMLFVF VVGPTVYVLD VLPASIGDYL
SNLVFMSTRT GAFSEPSWLG SWTVFYWAWW ISWAPFVGTF IARISRGRTV RQFLIGVLLV
PSGASVVWFA VLGGSALRVQ ATGGADLVAE TAAGSEEALF GLLEALPLGA LTSALAITLV
TLYFVTSADS ASLVLASLTS RGALRPRRVL VVAWGVLIGA TAAVLLLAGE LSALQQATIM
VALPFVVVML GLAWSLVKEL LQDPVVRARP PHGHGLAEAL HHARSTEEEQ E
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