Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Strop_3425 |
Symbol | |
ID | 5059894 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora tropica CNB-440 |
Kingdom | Bacteria |
Replicon accession | NC_009380 |
Strand | - |
Start bp | 3928956 |
End bp | 3930854 |
Gene Length | 1899 bp |
Protein Length | 632 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 640475674 |
Product | DNA primase |
Protein accession | YP_001160234 |
Protein GI | 145595937 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0358] DNA primase (bacterial type) |
TIGRFAM ID | [TIGR01391] DNA primase, catalytic core |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.236565 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTACGGCG AGGAGGTGGC GGAGATGACG GGGCGGATCC GGGACGAGGA CATCGCGTTG GTCCGCGAGC GCACCTCGAT CGCGGAGGTC ATCTCCGATA CGGTCACCCT GCGGTCTGCT GGTGGCGGCA ACCTGAAAGG GCTCTGCCCG TTCCACGACG AGAAGAGCCC GTCGTTCAAC GTGTCACCAG CCCGAAATGT CTGGTATTGC TTTGGCTGCG GCGCCGGCGG CGACGCCATC AAGTTCCTGA TGGATGCCGA GCATCTCAGC TTCGTCGAGT CCGTCGAGCG GCTGGCCGCC CGCGTCGGTC TGCAGCTCCG CTACGTGGCG ACCGACCACA CCACCCCCCG CGCTCGGCCG CAGCAGGGGC AGCGGCAGCG GTTGGTCGCC GCGCACGCCG CCGCGGTCGA GTTCTATCGG GCTCAGCTCA CCACCCCCGG AGCCCGACCG GCTCGCGAGT TCCTCGCCCG GCGTGGTTTC GACAAGGCCG CTGCCGAGCG GTATGCCTGC GGCTTCGCGC CCGACGGGTG GGACCTGTTG ACCCGCCACC TGCGTCAGCA GGGATTCAGC CACGATGAGC TGGTGACCGC CGGGCTGTCC CGGCCGGCCC GGTCGGGCAG CCTCATCGAC CGGTTCCGTC GCCGGCTGCT CTGGCCCATC CGGGACCTGA CCGGCGACGT CGTTGGCTTC GGTGCCCGCA AGCTCTTCGA CGACGACGAC AGCCCGAAGT ACCTGAACAC CCCCGAGACG CCGATCTACA AGAAGTCCCA CGTCCTCTAC GGCATCGACC AGGCCAAACG GGAGATCGCC AAGCAGGGCA AGGTCGTCGT GGTCGAGGGC TACACCGACG TGATGGCCTG TCACCTGGCC GGGGTGCCGA CCGCCGTGGC GACCTGTGGC ACCGCCTTCG GCACCGACCA CATCGGGGTG CTGCGTCGGC TGCTGCTGGA CACCGACGCC GTTGCCGGGG AGATCATCTT TACCTTCGAC GGGGACGCGG CCGGGCAGAA GGCGGCGCTA CGCGCCTTCG ACGACGATCA GCGCTTCGTC GGACGCACCT TCATCGCGGT CAGCCCGGAC GGCATGGACC CTTGCGAGCT GCGGCTGGCC AAGGGAGAGC TGGCCGTTCG TGACCTGGTC GCGAGCCGTG AACCGCTGGT CGACTTCGCG CTGCGGCACG TGATCGGCCG GCACGACCTC GACACCGTCG ACGGCCGGGT GGAGGCGATG CGCCGGGCGG CCCCGCTGGT CGCCAAAATC AAAGACCGAG AGAAGCGCCC AGAGTACGTC CGCAAGCTCG CCGGGGACCT CGGCATGGAG ATCGAGCCGG TTCAGCGGGC CGTACTGGCT GCCGCCCACG CCCCCGGCAA GACCAACACC GCGTCCCGCG GGGCCCCGGC ACAGCCGCAG TCGCCGTCAC CGGCGGACAG CCCACAGGTC ACCGTCGAGC GGGAGGCGCT GAAGCTGGCC CTTCAGGCGC CGGTGCTCGC CGGGCCGATG TTCGACGCCG TGGAGGCCAC GGAGTACCGC AATCCGGTGC ACGTCGCGGT CCGGGCGGCG GTGGCGGCGG CTGGGGGAGC GGCGGCGGCT ACCGGTGGTG CGGTCTGGAT CGAGTCGGTC CGCCACGCAT GCGAGGACCT CGCCGCCCAG GCGCTCGTCG GCGAGCTGGC TGTCGAGCCG CTGCGAATCG ACGGCGAGCT CGATCCGCGC TACGTGTCGG TGACGATGGC CCGCCTCCAG TGGGGAGCGG TGACCGGCCG GATCCGGGAG CTCAAGTCGA GAATTCAGCG GATCAACCCG GTCAGCAGCA AGGACGAGTA CTTCGCCGCC TTCGGCGAGT TGCTGTCCCT CGAGCAACAC GCCCGGGCGC TGCGTGAGCA GGCCGCTGGT GGGTTGTGA
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Protein sequence | MYGEEVAEMT GRIRDEDIAL VRERTSIAEV ISDTVTLRSA GGGNLKGLCP FHDEKSPSFN VSPARNVWYC FGCGAGGDAI KFLMDAEHLS FVESVERLAA RVGLQLRYVA TDHTTPRARP QQGQRQRLVA AHAAAVEFYR AQLTTPGARP AREFLARRGF DKAAAERYAC GFAPDGWDLL TRHLRQQGFS HDELVTAGLS RPARSGSLID RFRRRLLWPI RDLTGDVVGF GARKLFDDDD SPKYLNTPET PIYKKSHVLY GIDQAKREIA KQGKVVVVEG YTDVMACHLA GVPTAVATCG TAFGTDHIGV LRRLLLDTDA VAGEIIFTFD GDAAGQKAAL RAFDDDQRFV GRTFIAVSPD GMDPCELRLA KGELAVRDLV ASREPLVDFA LRHVIGRHDL DTVDGRVEAM RRAAPLVAKI KDREKRPEYV RKLAGDLGME IEPVQRAVLA AAHAPGKTNT ASRGAPAQPQ SPSPADSPQV TVEREALKLA LQAPVLAGPM FDAVEATEYR NPVHVAVRAA VAAAGGAAAA TGGAVWIESV RHACEDLAAQ ALVGELAVEP LRIDGELDPR YVSVTMARLQ WGAVTGRIRE LKSRIQRINP VSSKDEYFAA FGELLSLEQH ARALREQAAG GL
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