| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_3093 |
|---|
| Symbol | |
|---|
| ID | 5059557 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 3546319 |
|---|
| End bp | 3547332 |
|---|
| Gene Length | 1014 bp |
|---|
| Protein Length | 337 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640475343 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001159908 |
|---|
| Protein GI | 145595611 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3429] Glucose-6-P dehydrogenase subunit |
|---|
| TIGRFAM ID | [TIGR00534] opcA protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.123157 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGGCC TGTGGGACAC CACCGGCAAC GAGGTGGTCA AGGCGCTCGC TGCCGAGCGG
CGCAGCGCCG GCGGGGTGGC CAGTGGCATG GCACTCACGC TGATCGTGGT GGTGGACGAG
AAGCGGGTCC GCGAGGCGGA GGCCGCGGCG ACGATCGCTT CCGCCGCCCA TCCGTGCCGG
CTGCTGATCG TGGTTCGTTC CGACGTGGAT CGGGATCGCA ACCGGCTGGA CGCGGAGATC
GTCGTGGGTG GCCGGCTCGG CCCCGGTGAG GCGGTGGTGG CCCGGATGCA CGGGCGGCTG
GCCCTGCACG CCGAATCGGT GGTGATGCCG CTGCTGGTGC CGGACGTACC GGTGGTGACC
TGGTGGCACG CGGACCCGCC AGCCGAGATA GCCACCGACT TCCTGGGTGT GGTGGCGGAC
CGGCGAATCA CCGACGCCGC GCAGGCCGAC AACCCGATTG AGGCGCTGCG GCAGCGGGCG
CACGACTACG CTCCCGGTGA CACCGACCTG GCCTGGACCC GGGTCACGCT GTGGCGCACC
CTGGTGGCGG GTGCCTTCGA CACCACCGAG GCGAAGGTCA CCGCGGCTAC CGTGGTGGCA
CCACCGACCG ATCCGACGGC CGCACTGATG CGGGGCTGGC TCGCCTCCCG GCTGGGAATC
GACCCCCAGT GGCGGCACAC CGACCAGTAC TCCCGGATGC ACGAGGTGCA GTTGCGCTGC
GCCAACGGCG ACGAGCTGAC GCTGACCCGC AACGACAGCA TGGCGGTGTT CCGACGCAGC
GGCCAGGAGG ACCGCATCCT GCCGCTGGTG CGCCGGCCGC TCGGCGACGA GCTGGCCGAG
GAGTTGCGCC GGCTCGACGC CGACCAGGTA TACGCGGAGG CGCTCGGTGC TGCGGCGGGG
GTCTCCGGGT TGGAAAGCCG TCCCGCCCAG CGGGTGCATA TCTGGAAGGA CCCGGCTCAG
GCGCGGCGGG CCGAGGCGGG GATCACCGCG CACGCTGGGA TCGCGCGGGC ATGA
|
|---|
| Protein sequence | MIGLWDTTGN EVVKALAAER RSAGGVASGM ALTLIVVVDE KRVREAEAAA TIASAAHPCR
LLIVVRSDVD RDRNRLDAEI VVGGRLGPGE AVVARMHGRL ALHAESVVMP LLVPDVPVVT
WWHADPPAEI ATDFLGVVAD RRITDAAQAD NPIEALRQRA HDYAPGDTDL AWTRVTLWRT
LVAGAFDTTE AKVTAATVVA PPTDPTAALM RGWLASRLGI DPQWRHTDQY SRMHEVQLRC
ANGDELTLTR NDSMAVFRRS GQEDRILPLV RRPLGDELAE ELRRLDADQV YAEALGAAAG
VSGLESRPAQ RVHIWKDPAQ ARRAEAGITA HAGIARA
|
|---|
| |