Gene Strop_2704 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagStrop_2704 
Symbol 
ID5059167 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora tropica CNB-440 
KingdomBacteria 
Replicon accessionNC_009380 
Strand
Start bp3045293 
End bp3046945 
Gene Length1653 bp 
Protein Length550 aa 
Translation table11 
GC content68% 
IMG OID640474960 
Productglucose-methanol-choline oxidoreductase 
Protein accessionYP_001159526 
Protein GI145595229 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2303] Choline dehydrogenase and related flavoproteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.051308 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.893433 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGGCCA TCGAGAGTAC CGACGTTGTG GTGGTCGGCA GCGGGTTCGG CGGCGCGATC 
ACCGCATACC ATCTAGCCGC GGGCGGTGCT CGGGTGGTGG TGTTGGAGCG TGGTCCGTGG
CTGACGGGCC AGGACTTTGA CCAGGATTTC AAATTCGGGG CTTCCTCGAC CCGGGCCTTC
GACTTCACCG TCGGGGACGG CATGAGCGTG CTGGCCGGCA ACTGCGTCGG TGGCGGCAGT
GTTGTCTACT TCGCCGCGAT GCCGCGTGCT CCACGCTTCG TCTTCGAGCG GCACGGCAGC
ATCGGTCGGC GGATGTGGCC GGCCGCGGTC AGCCGCGACA CCCTTGAACC GTGGTACGAC
CGGGTCGCTG AGGCGTTGCC GGTTACCGGC CAGAGCTGGT CCGATGTGCC GTACTCAGGT
GGTCTGTGGG CGGCGGCCTG CGACCACGCC GGGCGCACGG CGAACCCGGT GCCGGTGGCG
ATCGACAACC AGCGGTGTGT CAACTGCAAC TGGATGATGT CCGGCTGCCG CTTCGATGCC
AAGCGCTCCC TGCTGCTCAA CTACCTACCG GCCGCGATAG CTCACGGCGC CCACATCCGA
CCCCTGCACG AGGTGCAGCG GCTTGAGCGG ACTGATGGTG GCTATCGCCT GCATTACACA
GTAGTCGATG ACGTTGACTA CCGGGTGGAA ACGGGCGGCG GTGCGATCGA TGCGAAAATC
GTGGTGCTGG CATCGGGAGC CGGGGCCACC CCGGTAATTC TGCAACGTTC CGCCGAGCTG
CTCGGCCCGA TGCCCGCGGC CGTGGGTCGC TACTTCTCCG GAAACGGGGA GCGGCTGAAC
ACCGCGGTCG TCAATGAGGA CCGGGTGCGC GACGTGCTGG GACTCAGCCG TTCGGACGGG
GTGCCGTACG AGGCATACCA GATTGGCAAG GGGCCGTGCG TGGCCAGCTG GGACCGGCTC
GACGGATCGT TGCCGGAGTA CCTCCGCTAC TCGCTGGAAC AGCTCTACTT CCCGCCCGGG
TTCGGCACCA TCCTCGCCCA GGTTCCCGAC GCCACCGGGC CGACGTGGTT TGGGGCGGAG
AAGAAGGAAC TTCTGCGCCA CTGGAAGTCC TGGCTGACCA TCTTCACGAT GAGCGAGGAC
GACAACGAGG GTGTGTTTGG CCCGCCGCCG CCTACCGGCA ACGCCGTTCG GGTCTCCCAG
CAGATGTTGG GACGGGGGGC GCTACGTTAC CGGCCCACCG AGAATACGCT GCGCGGATGG
GCCGCCTCTG ACGCGGAGGT GCGGGATATT CTCGAACGCG ACGGCCTCGC CCGGGTAATG
CCGTGGACCA ACGACGTGGT CGGGGCGTAT ACCGTGCACC CACTGGCCTC GTGTCGCATC
GGCGACGACC CGGCCACCTC GGCACTGGAC GACCGGCACG AACTGCGAGG TCACCCCGGC
ATCTTCGTCA CCGACGGCTC GGCGGTCCCC GGGGCGTTGA CGGTGAATCC CGCCATGACC
ATCGCCGCGC TGGCCGAGCG GGCAATCCCC GCCATCGTCG AAGCCGCGCG GCAGCGCGGC
GTCGCAGTGC GGTACGGCGC GCCGTCCCCG GATGGCGCCA CCGCTGGCCG GAATGCCGTG
TTGCCACTGG TGAGCGGCGG TACCGGCCGC TGA
 
Protein sequence
MTAIESTDVV VVGSGFGGAI TAYHLAAGGA RVVVLERGPW LTGQDFDQDF KFGASSTRAF 
DFTVGDGMSV LAGNCVGGGS VVYFAAMPRA PRFVFERHGS IGRRMWPAAV SRDTLEPWYD
RVAEALPVTG QSWSDVPYSG GLWAAACDHA GRTANPVPVA IDNQRCVNCN WMMSGCRFDA
KRSLLLNYLP AAIAHGAHIR PLHEVQRLER TDGGYRLHYT VVDDVDYRVE TGGGAIDAKI
VVLASGAGAT PVILQRSAEL LGPMPAAVGR YFSGNGERLN TAVVNEDRVR DVLGLSRSDG
VPYEAYQIGK GPCVASWDRL DGSLPEYLRY SLEQLYFPPG FGTILAQVPD ATGPTWFGAE
KKELLRHWKS WLTIFTMSED DNEGVFGPPP PTGNAVRVSQ QMLGRGALRY RPTENTLRGW
AASDAEVRDI LERDGLARVM PWTNDVVGAY TVHPLASCRI GDDPATSALD DRHELRGHPG
IFVTDGSAVP GALTVNPAMT IAALAERAIP AIVEAARQRG VAVRYGAPSP DGATAGRNAV
LPLVSGGTGR