Gene Strop_2602 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagStrop_2602 
Symbol 
ID5059065 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora tropica CNB-440 
KingdomBacteria 
Replicon accessionNC_009380 
Strand
Start bp2921094 
End bp2922020 
Gene Length927 bp 
Protein Length308 aa 
Translation table11 
GC content68% 
IMG OID640474858 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001159424 
Protein GI145595127 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.263864 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAGATC AGCAGTTCAC ACTGGATGGC ACCGTCGCGA TCGTGACCGG TGCGGGCAAC 
GGTCTGGGGC GTGCGGAAGC CCTCGAACTG GCGGCGAGTG GGGCCCGGCT CGTCCTCAAC
GACCTACCCG GCGAGGCCAT CACGGCAGTG GCCGCCGAGA TCGCGGCTGC GGGCGGCGAG
GCCACGGTGT GCACGGGTGA CATCGGCGAG TGGTCGACCG GTGAGTCCCT CGTGAACGCG
GCTCTCGACA CGTACGGCCG GCTGGACATC TTGGTCAACA ACGCCGGCGT CCTCCGCGAC
CGCATGGTCT TCACCATGTC AGCGCAGGAG TGGGATCTCG TCCTGCGGGT ACACCTGCGG
GGTCACTTCG TGACCACTCG CTTCGCCACC GCCTACTGGC GCGAGCGCAG CAAGACACTC
GGCACCCCCG TGTACGGTCG GATCATCAAC ACCTCCTCCG AGGCGTTTCT GCTCGGCTCG
CCCGGCCAGC CGAACTATGC CGCTGCGAAA GCCGGCGTCG TGGCCCTCAC CGTCGCGACC
GCGCGTAGCT GCGCCCGGTA CGGTGTCCGG GCCAACGCCA TCTGCCCGCG AGCGCGCACC
GCAATGACCA GTGAGCTCAT GGGGCCTTCT CCCGATGACG CGACTGATCC GTTGTCTCCC
ACGCATGTCG CACCGCTCGT GCGGTACCTC GCCAGTCCAG CCGGAGATCC GATCAACGGC
GAGGTCTTCG TCATCCACGG TGGCGTGGCC GCGGTGCTGG CGCCACCCAC CGTGCGCGCG
AGCTTCCACA CCGATGACGA GTCCTGGTCG CCATCCGCCC TACACGACGC CCTGGGACCG
CTGTTCGGTG ACAAGGCCTC CGAAGCGGGA TTCGTCTGCG AGGCCACCTT GCCGCTGGCG
ACGACCACGT TCGGCGAGAG CCGGTAG
 
Protein sequence
MTDQQFTLDG TVAIVTGAGN GLGRAEALEL AASGARLVLN DLPGEAITAV AAEIAAAGGE 
ATVCTGDIGE WSTGESLVNA ALDTYGRLDI LVNNAGVLRD RMVFTMSAQE WDLVLRVHLR
GHFVTTRFAT AYWRERSKTL GTPVYGRIIN TSSEAFLLGS PGQPNYAAAK AGVVALTVAT
ARSCARYGVR ANAICPRART AMTSELMGPS PDDATDPLSP THVAPLVRYL ASPAGDPING
EVFVIHGGVA AVLAPPTVRA SFHTDDESWS PSALHDALGP LFGDKASEAG FVCEATLPLA
TTTFGESR