| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_2005 |
|---|
| Symbol | |
|---|
| ID | 5058468 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 2275354 |
|---|
| End bp | 2276490 |
|---|
| Gene Length | 1137 bp |
|---|
| Protein Length | 378 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640474271 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001158837 |
|---|
| Protein GI | 145594540 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.833855 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0467613 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGAGT CGCCGGCGGT CCAGTTCGAC CGCGTCAGCG TCCGCTACGG GCAGGTCACG
GCGCTGCGGG ACTTCTCGCT CGACGTAGCC GCCGGCGAGA CGGTGGCCTT GCTCGGCCCC
TCCGGGTCGG GCAAGTCAAC CGCCCTAAAA GCGCTGGCCG GATTCGTCCG GCCGACAGCT
GGCCGGGTTC TGCTCAACGG CCAGGACGTC ACCGGGGCGC CACCGCACAA GCGTGGGCTC
GGCGTCGTGG TGCAGCAGTA CGCCCTCTTC CCGCACCTCA CCGTCGCCGA CAACATCGCG
TTCGGCCTGC GTGCCCGGCG GGTGCGACGC GCCGATTCAG CCCGACGTGT CGAGGAGATG
CTTGACCTGG TCGGCATGGA CCACTACGGC CGCCGCTATC CGCGGGAGCT CTCCGGCGGG
CAGCAACAGC GGGTGGCGAT CGCCCGCGCG TTGGCGATCC GGCCGCCGGT GCTGCTGCTC
GACGAGCCGC TGTCCGCCCT CGACGCACAG CTGCGCGCCG ACATGCTCGA CGAACTGCGT
CAGCTTCGAG ACGAGCTTCC GGACGTCGCG ATGCTCTACG TCACCCACGA CCAGACCGAA
GCGCTCACCC TGGCACACCG GATCGCCGTC ATGCGCGAGG CCGAACTGCT CGACCTGGAC
ACCGCCCAGG GCCTCTACCG GCAGCCACCG AGCGAGTTCA CCGCCGCCTT CCTGGGTGGG
GCGAACCTGC TGCCAGCCAT CGTGCGTGAA GTCAACGGCA CGGTTGAGGT AGGCACGGTC
ACCCTCACCG CCACCGCCCC CGGGCCACTC ACTCCCGGCA CCCGCGTGCG GCTCGCGGTG
CGGCCACACA CCATCGGGGT ACGCACCGAC GGGCCCGGCC TCGCAGCCAT CCTCACCGGC
CTGCAGTGGC GGGGTGCAAG CTACCGGTTA ACCTGCATGA TCGACGGGCT CGACGAGCCC
GGCGGACTCA GCGTGCACGC CGACGTGCCC AGCATCGACG GGCTCCCGCA GGTCGGTTCC
CCGGTACGGG TCCGGTTACC GGAGCATGGC GCAGCGGTGG TGGCGAAGAC GGGCGCGGGC
ACCCCCACCG AGGGCGCCAC CGACGTCGTT CCGCAGGGTC TGGCAGGTGT GGCATGA
|
|---|
| Protein sequence | MSESPAVQFD RVSVRYGQVT ALRDFSLDVA AGETVALLGP SGSGKSTALK ALAGFVRPTA
GRVLLNGQDV TGAPPHKRGL GVVVQQYALF PHLTVADNIA FGLRARRVRR ADSARRVEEM
LDLVGMDHYG RRYPRELSGG QQQRVAIARA LAIRPPVLLL DEPLSALDAQ LRADMLDELR
QLRDELPDVA MLYVTHDQTE ALTLAHRIAV MREAELLDLD TAQGLYRQPP SEFTAAFLGG
ANLLPAIVRE VNGTVEVGTV TLTATAPGPL TPGTRVRLAV RPHTIGVRTD GPGLAAILTG
LQWRGASYRL TCMIDGLDEP GGLSVHADVP SIDGLPQVGS PVRVRLPEHG AAVVAKTGAG
TPTEGATDVV PQGLAGVA
|
|---|
| |