Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Strop_1901 |
Symbol | |
ID | 5058360 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora tropica CNB-440 |
Kingdom | Bacteria |
Replicon accession | NC_009380 |
Strand | - |
Start bp | 2168214 |
End bp | 2169101 |
Gene Length | 888 bp |
Protein Length | 295 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 640474171 |
Product | UspA domain-containing protein |
Protein accession | YP_001158741 |
Protein GI | 145594444 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0589] Universal stress protein UspA and related nucleotide-binding proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.184723 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.100414 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGACGA GCAACGCCGG AGCCCCGGTT GTGGTGGGTG TGGACGGCTC CGCCGCCGCG CTGGACGCGG TCCGGGTAGC GGTACGCGAG GCGGAGTACC GGCAGCGCCC GCTACGGGTG GTGCACGCCT TCATCTGGCC GTTGACCGGT GCCCCGTTGA CCCCGGTTCC CGGCGCCCCG GTCACCGCCG GGCTGCGCAA TCAGGCCGAA CAGTATGTGA CAGAGGCTGT GGAACAGGCC CGCAAGATCT CCCCCGACCT GCGGATCACT GGTGTCGTGG TCGACGGCGC GCCGACCCCG GTGCTGATCG AGGAGGCGCA GGGAGCGGTG CTGACGGTGC TCGGCCACCG GGGACTGGGC GGCTTCGCCG GGCTGCTACT CGGCTCGGTC ACCGTGCAGG TCTCCGCCCG GGCGACGAGC CCGGTGCTGG TCGTCCGAGG TGAACCGCGC GCGGACGGCC CGGTCGTGGT GGGTGTGGAC GGTTCGCAGC TGTCCACCGA GGCGGTCGCC TTCGCATTCG AGGAAGCGGC CCGCCGGGAT GCTCCGCTGG TAGCCCTGCA CGCCTGGCTC TTCCCCACCC CCGTCGGCCC GGGAGACATC CTGCCCCTGG TCTACGACCT GGACGCCGTC GAGGGTGAGG AGGAGCGGAC TCTCGCCGAG TCGCTCGCCG GCTTCGCCGA ACAGTATCCG CAGGTACAGG TGCGGCACCG GGTCGTGCGG GGTTCTCCGG CCCGGGTGCT GGTGGAGGCG TCGAAGAGCG CCCAGTTGGT GGTCGTCGGC GCACACGGGC GCGGCGCCCT CGGCGGGCTG CTACTCGGCT CGGTCAGCCA CGCGGTCCTG CATCACGGGC ACAGCCCACT GGCCATCGTC CGACGCCCCA CCGGATAG
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Protein sequence | MMTSNAGAPV VVGVDGSAAA LDAVRVAVRE AEYRQRPLRV VHAFIWPLTG APLTPVPGAP VTAGLRNQAE QYVTEAVEQA RKISPDLRIT GVVVDGAPTP VLIEEAQGAV LTVLGHRGLG GFAGLLLGSV TVQVSARATS PVLVVRGEPR ADGPVVVGVD GSQLSTEAVA FAFEEAARRD APLVALHAWL FPTPVGPGDI LPLVYDLDAV EGEEERTLAE SLAGFAEQYP QVQVRHRVVR GSPARVLVEA SKSAQLVVVG AHGRGALGGL LLGSVSHAVL HHGHSPLAIV RRPTG
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