Gene Strop_1901 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagStrop_1901 
Symbol 
ID5058360 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora tropica CNB-440 
KingdomBacteria 
Replicon accessionNC_009380 
Strand
Start bp2168214 
End bp2169101 
Gene Length888 bp 
Protein Length295 aa 
Translation table11 
GC content72% 
IMG OID640474171 
ProductUspA domain-containing protein 
Protein accessionYP_001158741 
Protein GI145594444 
COG category[T] Signal transduction mechanisms 
COG ID[COG0589] Universal stress protein UspA and related nucleotide-binding proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.184723 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.100414 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGACGA GCAACGCCGG AGCCCCGGTT GTGGTGGGTG TGGACGGCTC CGCCGCCGCG 
CTGGACGCGG TCCGGGTAGC GGTACGCGAG GCGGAGTACC GGCAGCGCCC GCTACGGGTG
GTGCACGCCT TCATCTGGCC GTTGACCGGT GCCCCGTTGA CCCCGGTTCC CGGCGCCCCG
GTCACCGCCG GGCTGCGCAA TCAGGCCGAA CAGTATGTGA CAGAGGCTGT GGAACAGGCC
CGCAAGATCT CCCCCGACCT GCGGATCACT GGTGTCGTGG TCGACGGCGC GCCGACCCCG
GTGCTGATCG AGGAGGCGCA GGGAGCGGTG CTGACGGTGC TCGGCCACCG GGGACTGGGC
GGCTTCGCCG GGCTGCTACT CGGCTCGGTC ACCGTGCAGG TCTCCGCCCG GGCGACGAGC
CCGGTGCTGG TCGTCCGAGG TGAACCGCGC GCGGACGGCC CGGTCGTGGT GGGTGTGGAC
GGTTCGCAGC TGTCCACCGA GGCGGTCGCC TTCGCATTCG AGGAAGCGGC CCGCCGGGAT
GCTCCGCTGG TAGCCCTGCA CGCCTGGCTC TTCCCCACCC CCGTCGGCCC GGGAGACATC
CTGCCCCTGG TCTACGACCT GGACGCCGTC GAGGGTGAGG AGGAGCGGAC TCTCGCCGAG
TCGCTCGCCG GCTTCGCCGA ACAGTATCCG CAGGTACAGG TGCGGCACCG GGTCGTGCGG
GGTTCTCCGG CCCGGGTGCT GGTGGAGGCG TCGAAGAGCG CCCAGTTGGT GGTCGTCGGC
GCACACGGGC GCGGCGCCCT CGGCGGGCTG CTACTCGGCT CGGTCAGCCA CGCGGTCCTG
CATCACGGGC ACAGCCCACT GGCCATCGTC CGACGCCCCA CCGGATAG
 
Protein sequence
MMTSNAGAPV VVGVDGSAAA LDAVRVAVRE AEYRQRPLRV VHAFIWPLTG APLTPVPGAP 
VTAGLRNQAE QYVTEAVEQA RKISPDLRIT GVVVDGAPTP VLIEEAQGAV LTVLGHRGLG
GFAGLLLGSV TVQVSARATS PVLVVRGEPR ADGPVVVGVD GSQLSTEAVA FAFEEAARRD
APLVALHAWL FPTPVGPGDI LPLVYDLDAV EGEEERTLAE SLAGFAEQYP QVQVRHRVVR
GSPARVLVEA SKSAQLVVVG AHGRGALGGL LLGSVSHAVL HHGHSPLAIV RRPTG