Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Strop_1824 |
Symbol | |
ID | 5058283 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora tropica CNB-440 |
Kingdom | Bacteria |
Replicon accession | NC_009380 |
Strand | + |
Start bp | 2087754 |
End bp | 2089187 |
Gene Length | 1434 bp |
Protein Length | 477 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 640474094 |
Product | recombination factor protein RarA |
Protein accession | YP_001158664 |
Protein GI | 145594367 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2256] ATPase related to the helicase subunit of the Holliday junction resolvase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.00142888 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.964955 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTGGGT TCACGCCAGT CGGGGACGAC GCGCCGCTGG CCGTCCGAAT GCGCCCGACC GGCCTCGACG AGCTGATTGG CCAGGACCAC CTGCGTGCCC CCGGTGCTCC GTTACACCAA CTCGTCTCCG GGGCCGCACC GATGTCGGTG ATCCTCTGGG GGCCGCCCGG CAGTGGGAAG ACCACCATCG CGCACCTGGT GGCTGGGGCG ACCGACCGTC GCTTCGTGGC GATGTCGGCG CTGAACGCCG GGGTGAAGGA CGTCCGTGCC GTCATCGACG CCGCCCGCCG GCAGCGCCGC GCCGGCGGCC CGCAGACCGT GCTCTTTATT GATGAGGTGC ATCGGTTCAG CAAGACCCAA CAGGATTCGC TCCTCGCCGC GGTCGAGGAC CGGACCGTCA CGTTGCTGGC GGCGACGACC GAGAACCCAT ACTTCTCGGT CATCTCGCCG CTGTTGTCTC GGTGCGTGCT CCTCACCCTG CAGCCACTGG ACGACGACGC GGTGCGGAGT CTGCTCCGTC GCGCGGTCGT CGACGGTCGC GGCCTGGGCG GCACGCCTGT CCTCGCCCCC GAGGCCGAGG AGCATCTGGT CCGGCTCGCC GCCGGTGACG TCCGCAAGGC GCTCACCGCC CTGGAGGCCG CGGCCGCCTC TGCCACCGCG GTCGGTGCCC GCCGCATCGA CCTACCCACC GCCGAGCAGG CGGTGGACAG CGCCGCCGTC CGCTACGACC GTGACGGTGA CAGCCACTAC GACGTGACCA GCGCGTTCAT CAAGAGCATG CGCGGCTCCG ACGTGGACGC CGCGCTGCAC TGGTTGGCCC GGATGCTGGT CGCCGGCGAG GACCCGCGGT TCATCGCCCG TCGGATGGTC ATCTTCGCCA GCGAGGACGT CGGTATGGCC GACCCGGGTG CGCTCGGCGT GGCCACCGCC GCCGCCCACG CGGTGGAGTA CGTCGGCCTG CCGGAGGCCC AGCTCAACCT CGCCCAGGCG GTGATCCACC TGACCACGGC CCCGAAATCG AACTCGGCGA CCACCGCCAT CGGGGCGGCC CTCGCTGATG TCCGGGCTGG GCGGGGTGGC TCGGTGCCGC GTGGGCTACG GGACGCGCAC TACCCCGGCG CCAAAGGGCT CGGCCACGGC ACCGGCTACC GCTATCCCCA CGACGACCAG CGGGGTGTGG TCAACCAGCA GTACGTGCCG GACGACCTCG TCGGCACCGA CTACTACCGG CCCAGCCAGC ATGGTGCCGA GCGAGCCGTC GCCGACCGAC TGCCGCTGCT GCGGCGGATC ATTCGCCAGT CGTCGCCAAC GGCTGACCGC CGGCCGACGG CGTCCTGCGG TGCCGGGTTG GGCAACAGCC GCCCACCCGA GAGATCGGGT GACGACGCGG CGTACGAGGG TGGCAGAGAC GCCACTGAGG AGGGGCAGCA GTGA
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Protein sequence | MAGFTPVGDD APLAVRMRPT GLDELIGQDH LRAPGAPLHQ LVSGAAPMSV ILWGPPGSGK TTIAHLVAGA TDRRFVAMSA LNAGVKDVRA VIDAARRQRR AGGPQTVLFI DEVHRFSKTQ QDSLLAAVED RTVTLLAATT ENPYFSVISP LLSRCVLLTL QPLDDDAVRS LLRRAVVDGR GLGGTPVLAP EAEEHLVRLA AGDVRKALTA LEAAAASATA VGARRIDLPT AEQAVDSAAV RYDRDGDSHY DVTSAFIKSM RGSDVDAALH WLARMLVAGE DPRFIARRMV IFASEDVGMA DPGALGVATA AAHAVEYVGL PEAQLNLAQA VIHLTTAPKS NSATTAIGAA LADVRAGRGG SVPRGLRDAH YPGAKGLGHG TGYRYPHDDQ RGVVNQQYVP DDLVGTDYYR PSQHGAERAV ADRLPLLRRI IRQSSPTADR RPTASCGAGL GNSRPPERSG DDAAYEGGRD ATEEGQQ
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