Gene Strop_1742 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagStrop_1742 
SymbolgabD1 
ID5058201 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora tropica CNB-440 
KingdomBacteria 
Replicon accessionNC_009380 
Strand
Start bp1995897 
End bp1997309 
Gene Length1413 bp 
Protein Length470 aa 
Translation table11 
GC content69% 
IMG OID640474013 
Productsuccinic semialdehyde dehydrogenase 
Protein accessionYP_001158583 
Protein GI145594286 
COG category[C] Energy production and conversion 
COG ID[COG1012] NAD-dependent aldehyde dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.847315 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.737233 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCATCG CCACCATCAA CCCGGCCACC GGAGAGACGC TGAGGACGTT TGCACCGATC 
GCGTCCGAGC AGGTGGAGGC GGCGATCAGC CGGAGCTACC TCGCGAGTCG GCAGCTGCGG
GACACGACGG TCGAGGAACG TGGCGACTGG CTCGACAGGG TTGCCGCCCT CCTGGAGGCC
GAGCGCGACG ACGTCGCCCG ACTCGTGACA ACGGAGATGG GAAAGACCTA CGCCGCTGCC
CGGGCGGAGG TGGCCACCTG CGTCAGCGCC TGCCGCTTCT ACGTGACGAA GGCACCAGCG
TTCCTCGCCG ACGAGCCCGC CGAGGCGGCG AGCGTCGGCG CCGCCCGGGC TTTCGTCCGG
TACCAACCTC TCGGGCCGGT GCTTGCGGTG ATGCCCTGGA ACTTTCCGCT CTGGCAGGTG
CTCCGTTTCG CCGCGCCGGC GCTGATGGCC GGCAACACCG GCCTACTCAA GCACGCCTCG
AATGTGCCCC AGACCGCTCT CTATCTGGCT GATCTCTTCC GCCGGGCCGG CTTTCCGCAG
GGGGCGTTCA GTACGCTGCT GGTCGGCTCC GACGCGGTGG AGGCCATTCT TCGTGACCCA
CGGGTTCGCG CCGCTACGGT GACCGGCAGC GAGCGTACGG GACGCGCCGT GGCCCAGATC
GCCGGTCGTG AGTTGAAGAA GACCGTGTTG GAACTCGGTG GCAGCGACCC GTTCGTGGTG
ATGCCCTCGG CGGACCTGGA CCGGGCTGCC GAGGTGGCGA CCGCTGCCCG GTGCCGAAAC
AACGGCCAGT CCTGCATCGC CGCGAAGCGC TTCATCGTGC ACACCGACGT GTTCGAGGCC
TTCGCGGAGC GGTTCGCCGC GCGGATGTCC GCACTGCGGG TGGGGGACCC GATGGCGCAG
GCCACCGACG TGGGTCCACT CGTCAGCGAA GGGAGCCGTG CCGAGATCGC CTCCCAGGTA
CGCGACGCCG TTGACCAGGG TGCGACCCTT CGCTGTGGGG GTGAGTTGCC AGCGGGGGAG
GGCTGGTACT ACCCGCCCAC CGTCATCGCC GATCTCACCC CGCGAATGCG GATGTGGGCC
GAGGAGGTTT TCGGGCCAGT CGCCGGGCTG TACCGAGTGT CGTCGTACGG CGAGGCGATC
GAGGTGGCCA ACGGCACCGC GTTCGGGCTC GGTGCGAACG CCTGGACCCG GGATCCGGCG
GAGCAGGAGC GGTTCGTCAT CGACCTGGAG GCGGGCAACG TCTTCGTCAA CGGCATGACC
ACGTCCTTTC CCGAGCTGCC GTTTGGTGGG GTGAAGAACT CCGGGTACGG CCGCGAGCTG
GCCGCGGTGG GGATGCGCGA ATTCTGCAAC ACCAAGACCG TGTGGGTTGG TGGCGACGGC
ACCACCGGGC CGGTGTCAGC GCACGCCGAG TGA
 
Protein sequence
MPIATINPAT GETLRTFAPI ASEQVEAAIS RSYLASRQLR DTTVEERGDW LDRVAALLEA 
ERDDVARLVT TEMGKTYAAA RAEVATCVSA CRFYVTKAPA FLADEPAEAA SVGAARAFVR
YQPLGPVLAV MPWNFPLWQV LRFAAPALMA GNTGLLKHAS NVPQTALYLA DLFRRAGFPQ
GAFSTLLVGS DAVEAILRDP RVRAATVTGS ERTGRAVAQI AGRELKKTVL ELGGSDPFVV
MPSADLDRAA EVATAARCRN NGQSCIAAKR FIVHTDVFEA FAERFAARMS ALRVGDPMAQ
ATDVGPLVSE GSRAEIASQV RDAVDQGATL RCGGELPAGE GWYYPPTVIA DLTPRMRMWA
EEVFGPVAGL YRVSSYGEAI EVANGTAFGL GANAWTRDPA EQERFVIDLE AGNVFVNGMT
TSFPELPFGG VKNSGYGREL AAVGMREFCN TKTVWVGGDG TTGPVSAHAE