Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Strop_1742 |
Symbol | gabD1 |
ID | 5058201 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora tropica CNB-440 |
Kingdom | Bacteria |
Replicon accession | NC_009380 |
Strand | + |
Start bp | 1995897 |
End bp | 1997309 |
Gene Length | 1413 bp |
Protein Length | 470 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640474013 |
Product | succinic semialdehyde dehydrogenase |
Protein accession | YP_001158583 |
Protein GI | 145594286 |
COG category | [C] Energy production and conversion |
COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 0.847315 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.737233 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCATCG CCACCATCAA CCCGGCCACC GGAGAGACGC TGAGGACGTT TGCACCGATC GCGTCCGAGC AGGTGGAGGC GGCGATCAGC CGGAGCTACC TCGCGAGTCG GCAGCTGCGG GACACGACGG TCGAGGAACG TGGCGACTGG CTCGACAGGG TTGCCGCCCT CCTGGAGGCC GAGCGCGACG ACGTCGCCCG ACTCGTGACA ACGGAGATGG GAAAGACCTA CGCCGCTGCC CGGGCGGAGG TGGCCACCTG CGTCAGCGCC TGCCGCTTCT ACGTGACGAA GGCACCAGCG TTCCTCGCCG ACGAGCCCGC CGAGGCGGCG AGCGTCGGCG CCGCCCGGGC TTTCGTCCGG TACCAACCTC TCGGGCCGGT GCTTGCGGTG ATGCCCTGGA ACTTTCCGCT CTGGCAGGTG CTCCGTTTCG CCGCGCCGGC GCTGATGGCC GGCAACACCG GCCTACTCAA GCACGCCTCG AATGTGCCCC AGACCGCTCT CTATCTGGCT GATCTCTTCC GCCGGGCCGG CTTTCCGCAG GGGGCGTTCA GTACGCTGCT GGTCGGCTCC GACGCGGTGG AGGCCATTCT TCGTGACCCA CGGGTTCGCG CCGCTACGGT GACCGGCAGC GAGCGTACGG GACGCGCCGT GGCCCAGATC GCCGGTCGTG AGTTGAAGAA GACCGTGTTG GAACTCGGTG GCAGCGACCC GTTCGTGGTG ATGCCCTCGG CGGACCTGGA CCGGGCTGCC GAGGTGGCGA CCGCTGCCCG GTGCCGAAAC AACGGCCAGT CCTGCATCGC CGCGAAGCGC TTCATCGTGC ACACCGACGT GTTCGAGGCC TTCGCGGAGC GGTTCGCCGC GCGGATGTCC GCACTGCGGG TGGGGGACCC GATGGCGCAG GCCACCGACG TGGGTCCACT CGTCAGCGAA GGGAGCCGTG CCGAGATCGC CTCCCAGGTA CGCGACGCCG TTGACCAGGG TGCGACCCTT CGCTGTGGGG GTGAGTTGCC AGCGGGGGAG GGCTGGTACT ACCCGCCCAC CGTCATCGCC GATCTCACCC CGCGAATGCG GATGTGGGCC GAGGAGGTTT TCGGGCCAGT CGCCGGGCTG TACCGAGTGT CGTCGTACGG CGAGGCGATC GAGGTGGCCA ACGGCACCGC GTTCGGGCTC GGTGCGAACG CCTGGACCCG GGATCCGGCG GAGCAGGAGC GGTTCGTCAT CGACCTGGAG GCGGGCAACG TCTTCGTCAA CGGCATGACC ACGTCCTTTC CCGAGCTGCC GTTTGGTGGG GTGAAGAACT CCGGGTACGG CCGCGAGCTG GCCGCGGTGG GGATGCGCGA ATTCTGCAAC ACCAAGACCG TGTGGGTTGG TGGCGACGGC ACCACCGGGC CGGTGTCAGC GCACGCCGAG TGA
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Protein sequence | MPIATINPAT GETLRTFAPI ASEQVEAAIS RSYLASRQLR DTTVEERGDW LDRVAALLEA ERDDVARLVT TEMGKTYAAA RAEVATCVSA CRFYVTKAPA FLADEPAEAA SVGAARAFVR YQPLGPVLAV MPWNFPLWQV LRFAAPALMA GNTGLLKHAS NVPQTALYLA DLFRRAGFPQ GAFSTLLVGS DAVEAILRDP RVRAATVTGS ERTGRAVAQI AGRELKKTVL ELGGSDPFVV MPSADLDRAA EVATAARCRN NGQSCIAAKR FIVHTDVFEA FAERFAARMS ALRVGDPMAQ ATDVGPLVSE GSRAEIASQV RDAVDQGATL RCGGELPAGE GWYYPPTVIA DLTPRMRMWA EEVFGPVAGL YRVSSYGEAI EVANGTAFGL GANAWTRDPA EQERFVIDLE AGNVFVNGMT TSFPELPFGG VKNSGYGREL AAVGMREFCN TKTVWVGGDG TTGPVSAHAE
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