| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_1714 |
|---|
| Symbol | |
|---|
| ID | 5058173 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 1966411 |
|---|
| End bp | 1966983 |
|---|
| Gene Length | 573 bp |
|---|
| Protein Length | 190 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640473986 |
|---|
| Product | regulatory protein, TetR |
|---|
| Protein accession | YP_001158556 |
|---|
| Protein GI | 145594259 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 0.841461 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.644689 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACAGTG GCCGGCTCTC CGACGTCCTC GACGCCACCT ACACCTGCCT GATCAGATAT
GGCGTACGGC GGACGACGAT GGATGACATC GCCGCCGCGA TGGGCGTCTC CCGGTCCGCT
GTCTACCAGT ACGTTCGGGG CAAGGATGAC GCGTTCCGGC AGCTCGCCGG GCGCCTGCAC
ACCCAGGCGC TGACCCGTGC TCGGCAGGCG GCCGGCCAGG ACGCCCCCTG TGTCCAGCGC
ATCCGGGGCG TCCTGGCCGC CAAGCTTGAC CTGTCCCTCC ACCTGATCGG GGACTCGCCG
CACACCGCTG AGCTGATCGA CAGCAAGGCC CGGTTGTTCG GTGAGATCTG CACCGAGTTC
ACCGTGGAGT TGCGGAAGTT GCTGGCGGGC CTCTTCACCG AGGCGGGCGC GGCGGACGCG
GACGCGGCAG CCGAGATCTG CGTTGCCCTG GTTGCCGGCC TGGAGACGGC CCCAAACGGT
CGGCACCTGC TGGGCCGTGC CGTCGACGCG CTCGTCCCCG GACTGCTGCC CCCGGCCGAG
CCGGTCGGTC ACGTCAGTGG CACCACTGTT TAG
|
|---|
| Protein sequence | MDSGRLSDVL DATYTCLIRY GVRRTTMDDI AAAMGVSRSA VYQYVRGKDD AFRQLAGRLH
TQALTRARQA AGQDAPCVQR IRGVLAAKLD LSLHLIGDSP HTAELIDSKA RLFGEICTEF
TVELRKLLAG LFTEAGAADA DAAAEICVAL VAGLETAPNG RHLLGRAVDA LVPGLLPPAE
PVGHVSGTTV
|
|---|
| |