| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_1697 |
|---|
| Symbol | |
|---|
| ID | 5058156 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 1941088 |
|---|
| End bp | 1942080 |
|---|
| Gene Length | 993 bp |
|---|
| Protein Length | 330 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640473969 |
|---|
| Product | TRAP transporter solute receptor TAXI family protein |
|---|
| Protein accession | YP_001158539 |
|---|
| Protein GI | 145594242 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.607751 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.828936 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGGGTT GCGCCCGGCC ACCTGCACGG CGCACAGTGC AGCCCGTGAT CAGAACCCCA
GGTCGCCGAC GCGGCGCGGC GCTACCGGTG CTGCTCCTGG CGATGGCGCT GCCGGGTCTC
ACCGGATGCC AGGACGCCTC TCCGCCAGCC GTGCAGATCC GCATCGCCAC CGGCAGTCCC
ACCGCCGTCT ACTACGCCTT CGGGCAGTCA CTGGCCACCA TCCTCAACCG GGAGCTACCG
AACGTTGCGG CTGAGGTGCG GGTGACCGCC GCCTCGGCGG AAAACATCCA ACTCGTCGAC
GCGGGCGAAG CGGAACTCGG CTTCACCCAG GCCGACGCAC TCCCCGCCGT CCCGACCACG
CCGCCGACGA TAGCCGCCGT GGCTCGCGTC TACGACGACC TCCTGCACCT CGTCACCACC
CCGGCCAGCG GCGTCCGCAC CCTCGCCGAC CTGCGGGGCC GGCGGGTGTC CGTGGGGGCA
CCCGGGTCCG GGACCGAGAT CACCACATCC CGCCTGCTCG ACGTGGCCCA GCTCGGCGAG
GACGAGGTGC ACCGGGAGCG ACTCGGCCTG GACGACTCGG TCGAGGCACT GCGGGCGGGT
CAGATCGACG CGTTCTTCTT CTCCGGCGGC CTACCAGTGG GGGCGGTAAC GACGCTGGCC
GCACAACGGC GCGTCCAGCT GGTCGACCTC GGTGCGTGGA CCACGCCGCT TCGCGCCCAC
CATCCCGGCT TCTACGTCTC CCGGGACATC CCCCGCTCGG TGTACGGAGT GGACCCGGTG
ACCACCGTCG CGAACCCGAA CTACCTGATC GTCCGCGCCG ACCTACCGGA GGGACTGGTC
CGGGAGCTGA CCCGGCTCCT CATGGAACGG CGCGAGGAAC TGGCGTCGGC GCACCCGGCA
GCCGGTCAGA TGAGTCCACG CTCGGCCATC AACACCACGC CCCTGCCACT GCACCCCGGG
TCGGTGGCCT GGTACAACGC GGTCAAACCG TAG
|
|---|
| Protein sequence | MRGCARPPAR RTVQPVIRTP GRRRGAALPV LLLAMALPGL TGCQDASPPA VQIRIATGSP
TAVYYAFGQS LATILNRELP NVAAEVRVTA ASAENIQLVD AGEAELGFTQ ADALPAVPTT
PPTIAAVARV YDDLLHLVTT PASGVRTLAD LRGRRVSVGA PGSGTEITTS RLLDVAQLGE
DEVHRERLGL DDSVEALRAG QIDAFFFSGG LPVGAVTTLA AQRRVQLVDL GAWTTPLRAH
HPGFYVSRDI PRSVYGVDPV TTVANPNYLI VRADLPEGLV RELTRLLMER REELASAHPA
AGQMSPRSAI NTTPLPLHPG SVAWYNAVKP
|
|---|
| |