| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_1684 |
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| Symbol | |
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| ID | 5058143 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salinispora tropica CNB-440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009380 |
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| Strand | - |
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| Start bp | 1925125 |
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| End bp | 1926678 |
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| Gene Length | 1554 bp |
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| Protein Length | 517 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640473956 |
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| Product | 4-diphosphocytidyl-2C-methyl-D-erythritol synthase |
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| Protein accession | YP_001158526 |
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| Protein GI | 145594229 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
[COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
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| TIGRFAM ID | [TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.228213 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCACG AGCAGACCGC CGTAGCGTCG GCCGGCGCCC AGCCCTGGCG GCCCACCCGG
ACCGTCGCGG TGATCCTGGC CGGTGGTACC GGCACCCGAC TCGGCCTCGG TATCCCCAAA
CAGCTACTCA AGGTCGCCGG CAAACCGATC ATCGAGCACA CCCTCGCTGT CTTCGAGGCC
GCGCCCGAGA TTGACGAGAT CATCGTGCTG ATGGCGGCCG GGCACGTCCC GGACGTCGAA
CAGATCGTGC AGCAGGCCGG GTTCGGCAAG GTCTCGGCCG TCGTCGAGGG CGGGCAGACC
CGCAACGCCA CCACCCGCCT CGCGCTGGAG ATGATCGGTC CGGACGACTG CAACATCCTG
TTCCACGACG CGGTACGTCC GCTGACTAGC GGGCGCATCA TCCGGGAGTG CGTGAACGCG
CTCTGGACGT ACTCGGCGGT TGATGTGGCC ATCCCGTCAG CGGACACGAT CATCCAGGTG
GACGAGGACG ACTGCATCAC CGACATCCCG GTCCGCTCTC GGCTACGCCG GGGTCAGACC
CCCCAGGCCT TCCGCTCCGG TACCATCCGC GCGGCGTACC AGGAAGCGGC GGGTGACCCG
GACTTCGCCG CGACCGACGA CTGCGGCGTG GTGCTGCGCT ACCTGCCCGG CACGCCGATC
AAGGTGATCG ACGGCACCGA CGAGAACATC AAGGTCACCC ACCCGCTCGA TGTGCACCTG
GCGGACAAGC TGTTTCAACT CGCCGCCGCC AAGGCGCCCC GGTTAGCCGA CCACCGGGAC
TACATCGAGG AGCTGACCGG CCGCACGATC GTCGTCTTCG GCGGCAGCCA CGGCATCGGC
CAGGAGCTGA CCGCACTGGC CCGGCGCTAC GGCGCCCGGG TCTTCCCGGT CAGCCGCTCG
AGCACCGGCA CCCACGTGGA GCGGGCCGAG GACGTCGAGG CCGCACTCCA GACCGCCTTC
GCCGCGACCG GCCGGATCGA CCATGTGGTC GTCACCGCCG GGCTGTTGGA GAAGGGCATG
CTCGCCGACA TGGACGCCGG CACCGTGGAC CAACTGCTCC AGGTGAACTT CGTCGGCCCG
GTGACGGTAG CCCGCGCGGC ACTACCGTAC CTACGGCGGA CCCAGGGCCA GCTGCTGCTC
TACACCTCCA GCTCGTACAC CCGGGGCCGA GCCCGGTACG CGCTCTACTC GGCCACCAAG
GCAGCCCTGG TGAACCTCAC CCAGGCCCTC GCCGACGAGT GGGCCGAGGC CGACGTACGG
GTCAACTGCG TCAACCCGGA GCGCACCGCC ACGCCGATGC GTACCCGGGC GTTCGGCCCA
GAACCGGCGC ACACCCTACT CACCGCGGCG GCGGTGGCGC GGGCCTCGCT GGACGTACTG
CTCTCCGGGC TCACCGGGCA GGTGATCGAC GTACGCCGTG CGGACGACGA GGAGGCGGAG
TCGATGGCTG TCCTGCCGAC GCAGGCCGGA GGGGAGCGCG CCGAGCGCCC CGCCGATCAG
TCGGGGGCGG GTCGTGGTCC GGACCAGGTG GAGGCGAACC ACGGTGCGCG GTGA
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| Protein sequence | MTHEQTAVAS AGAQPWRPTR TVAVILAGGT GTRLGLGIPK QLLKVAGKPI IEHTLAVFEA
APEIDEIIVL MAAGHVPDVE QIVQQAGFGK VSAVVEGGQT RNATTRLALE MIGPDDCNIL
FHDAVRPLTS GRIIRECVNA LWTYSAVDVA IPSADTIIQV DEDDCITDIP VRSRLRRGQT
PQAFRSGTIR AAYQEAAGDP DFAATDDCGV VLRYLPGTPI KVIDGTDENI KVTHPLDVHL
ADKLFQLAAA KAPRLADHRD YIEELTGRTI VVFGGSHGIG QELTALARRY GARVFPVSRS
STGTHVERAE DVEAALQTAF AATGRIDHVV VTAGLLEKGM LADMDAGTVD QLLQVNFVGP
VTVARAALPY LRRTQGQLLL YTSSSYTRGR ARYALYSATK AALVNLTQAL ADEWAEADVR
VNCVNPERTA TPMRTRAFGP EPAHTLLTAA AVARASLDVL LSGLTGQVID VRRADDEEAE
SMAVLPTQAG GERAERPADQ SGAGRGPDQV EANHGAR
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