Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_2085 |
Symbol | |
ID | 5053348 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | - |
Start bp | 2156916 |
End bp | 2158589 |
Gene Length | 1674 bp |
Protein Length | 557 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640472260 |
Product | 60 kDa inner membrane insertion protein |
Protein accession | YP_001156860 |
Protein GI | 145590263 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0706] Preprotein translocase subunit YidC |
TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain [TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.39067 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACTTTA AAAAAACGAT TCTTTGGGCT GTGTTTTCGC TGTCAGGTCT CATGCTTTAC AACAATTGGC AGGTTCATGA GGGCAAACCT TCTATGTTTG GGGGTGCTCC AGCCACTACA GCAAGTGCGC CAAATAAATC GGGCGCCCCT GCCAAGCTAG ATACACCAGT AGCAATTTCA GGCATTCCTT CAGTCACGCA AACACCTACA GCAAATTCTG CTCCCGTAGA GAGCACCCAA AAATTTGTTT TAGAAAATGA ACTACTCTCC GTTGAGATCA GCGCGGCTGG TGCAAATGTA GTTGACGCAA AACTGTTGAA GGAATTAACG GCCGATCAAA AGCCAGTTGA AATATTTCAA CACACACCTA CACATACTTA TGTTGCGCGC TCTGGTTTAG TTGCGGTAGG CAATACAGAT TTGCCAAATC ACACCAGCCT ATTCAAGTTA GATCGCTCCG GCAAAGATGG TTCTGGAAGA CCATTTCTGG TTCTTTCTAG CGAGCGTAAT GGCGTCAAGC TAGAAAAAAC ATTCCTCTTA AATCCTGGAA GCTATGACAT CTATGTTGGT CATCGAGTAA CTCAAGTTAC TCCAAACGGC GCACCATTAA TTCTTTATAC CGAAATTGTT CGCGATGGAT CGGAAGAGAA AAAAATTGGC CCTTTCGGTG GAGCCTTCTC AGCGAGCACC TTTACTGGCC CAGCAATTTA TACCGATGGA GGCAAATATA AAAAAGTTTC ATTTGCTGAT ATAGAAAAAA ATAAATTTAC TGCACCCTCA CAAATTGCAG CAGGACAGCC TGGCTGGGTT GCCATGGTTC AGCATTATTT TGCTAGCGCT TGGATTCCAG ACGATAAATT ACCGCGTGAT ATTTATTCTG GAAAAATTGA TAATGACCTG TATCGCGTGG GTATGCAAAC CCAGCTTGGC ACCATTGCTA CTGGTACTAC GGTAATGGCT AATGCCCAAT TATTCGTTGG CCCACAAGAA GAGCGCATGC TGGAAACGAT TGCGCCGGGG CTTGAGTTAT TAAAAGATTA CGGCTATCTC ACTATTCTGG CTAAACCAAT TTTTTGGTTG TTAGAGCATA TTCACAACAT TGTGGGTAAT TGGGGTTGGT CAATCATCCT TCTTACTGTT TTGATTAAAT TGGCGTTCTT CCCGCTTTCA GCAGCCAGTT ATAAATCTAT GGCGCGCATG AAAGAGGTTC AGCCTCGCTT GGCGGCCATG AAAGAGCAGT ACAAGGGGGA GCCACAAAAA CTCAACCAAG CAATGATGGA GATGTATCGC AAGGAAAAAA TCAACCCACT AGGGGGTTGT TTGCCAGTAG TGATTCAGAT CCCTGTGTTT ATTTCTTTGT ATTGGGTGCT GCTGTCGTCT GTAGAGATGC GTGGCGCACC ATGGATTTTA TGGATTCATG ATTTATCAGT GCCAGACCCT TACTATATTT TGCCGGTGGT TATGGCGGTA TCGATGTTTG TGCAAACCAA ACTTAACCCG ACACCACCTG ATCCTGTTCA GGCCAAAGTC ATGATGTACA TGCCTATCGT TTTCTCGATC ATGTTCTTCT TCTTCCCTGC GGGCTTGGTT TTATATTGGG TAACCAACAA CCTGTTGTCT ATTGCTCAGC AATGGCAAAT CAACCGCTTG TTTGGAAAGA AGCCTGCCAA ATAA
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Protein sequence | MDFKKTILWA VFSLSGLMLY NNWQVHEGKP SMFGGAPATT ASAPNKSGAP AKLDTPVAIS GIPSVTQTPT ANSAPVESTQ KFVLENELLS VEISAAGANV VDAKLLKELT ADQKPVEIFQ HTPTHTYVAR SGLVAVGNTD LPNHTSLFKL DRSGKDGSGR PFLVLSSERN GVKLEKTFLL NPGSYDIYVG HRVTQVTPNG APLILYTEIV RDGSEEKKIG PFGGAFSAST FTGPAIYTDG GKYKKVSFAD IEKNKFTAPS QIAAGQPGWV AMVQHYFASA WIPDDKLPRD IYSGKIDNDL YRVGMQTQLG TIATGTTVMA NAQLFVGPQE ERMLETIAPG LELLKDYGYL TILAKPIFWL LEHIHNIVGN WGWSIILLTV LIKLAFFPLS AASYKSMARM KEVQPRLAAM KEQYKGEPQK LNQAMMEMYR KEKINPLGGC LPVVIQIPVF ISLYWVLLSS VEMRGAPWIL WIHDLSVPDP YYILPVVMAV SMFVQTKLNP TPPDPVQAKV MMYMPIVFSI MFFFFPAGLV LYWVTNNLLS IAQQWQINRL FGKKPAK
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