Gene Pnuc_2079 details

Gene Information

• Locus tag: Pnuc_2079
• Symbol: def
• ID: 5052440
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1
• Kingdom: Bacteria
• Replicon accession: NC_009379
• Strand: -
• Start bp: 2148293
• End bp: 2148808
• Gene Length: 516 bp
• Protein Length: 171 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 640472254
• Product: peptide deformylase
• Protein accession: YP_001156854
• Protein GI: 145590257
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0242] N-formylmethionyl-tRNA deformylase
• TIGRFAM ID: [TIGR00079] peptide deformylase

Plasmid Coverage information

• Num covering plasmid clones: 34
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTTTGT TAACTGTTCT TTGTTACCCC GATCAGCGCT TACATAAGGT TGCTAAACCA 
GTAGCGCAGG TAGACGCGCG CATTCAGAAA ATCGTAGCTG ATATGGCTGA CACCATGTAT 
GACGCCCCAG GGGTTGGTTT GGCAGCAACT CAGGTAGATA TACATGAACG AATCGTGGTG 
ATTGATGTAT CTGATGACCA AAATGAATTA ATGGTTTTTA TTAATCCTGA AATTGTTTGG 
GCAAGCCCTG AGAAAAAATC CTGGCGAGAA GGATGCTTAT CCGTGCCTGA GTTTTATGAT 
GAAGTAGAAA GACCAGCGGA GATTAGAGTG AAGGCACTCA ACCTTAAAGG AGAAGAGTTT 
GAGTTGGAGG CCGATGGCCT CTTGGCAGTT TGCCTGCAGC ATGAGCTTGA TCATCTTCAA 
GGGAAAGTAT TTGTGGAGTA CTTATCAATG CTCAAGCAAG TACGTATTTC ACAAAAAATG 
AAAAAGCGCC TCAAAGAGTT GGCGGGTGAG CGCTAA 

 

Protein sequence

MALLTVLCYP DQRLHKVAKP VAQVDARIQK IVADMADTMY DAPGVGLAAT QVDIHERIVV 
IDVSDDQNEL MVFINPEIVW ASPEKKSWRE GCLSVPEFYD EVERPAEIRV KALNLKGEEF 
ELEADGLLAV CLQHELDHLQ GKVFVEYLSM LKQVRISQKM KKRLKELAGE R