Gene Pnuc_2077 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_2077 
Symbol 
ID5053257 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand
Start bp2145943 
End bp2147259 
Gene Length1317 bp 
Protein Length438 aa 
Translation table11 
GC content46% 
IMG OID640472252 
Productsun protein 
Protein accessionYP_001156852 
Protein GI145590255 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0144] tRNA and rRNA cytosine-C5-methylases 
TIGRFAM ID[TIGR00563] ribosomal RNA small subunit methyltransferase RsmB 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGACCGACA ATAAAAAAAC ACTCAGCCTT CCGCTCTCTG AAGCGATTAC TATTGCGGCG 
CAAGCAATTA GCGAGGTAAT GAGCGGCCGT TCGCTTACTG AAGTATTGGA TGAGTTAGAC
GCTCATGAGC GACCAATTGT GCAAAGCTTA ACTTTCGATG CTTTACGAAA GTGGGTACGC
TCTCATGAAC TTATTAAGCA ATTTGTTCCC AAGACACCGC CGCCAGAAGT AGATCATTTA
CTGAGCGTTG CTATTGCATT GTTCATAAGA AATGATGCGG ATGACAAAGG CTATGCAGTA
CATACAGTGG TTGATCAAGC GGTTAGAGCT TGTGGTGAGT ATGACCAGAC GTTGTATGCC
AAGGGCCTGG TAAATGCTGT ATTACGCAAG GTGAGCCTAG CTTTGCAGCC AGTAGCAGAC
AAGCCTTTTT ACCCGCCTGA CCCCATTGCC ATGTTTGTGC CGCCCTGGTG GCGCGCTAGT
TTGAAACGGA ATTATTCAAA AGATTGGCAA GCCATTCTAT TTGCCCAAGC AAAGCGGGCG
CCCTTAATTT TGCGCGTGAA CCAAAAACAA TATTCACGAG ATGAATATCG GGCTTTATTA
ACTGAGTCAG GAATTCAATC AAAGCCAATA AATGCCATAG CAGGAATTTC ATTGCCCTCT
GCACTGTTAT TGCCTGATGC AGTGCCTGTA TCAGATCTGC CTGGTTTTTA TAGTGGTGCA
GTATCCGTTC AGGACGCAGG AGCACAATTA GCGGCAACCT TATTAAATCC ACAGGCAGAT
GAGTTGATAT TAGATGCATG CGCTGCACCG GGCGGTAAAA CTGCACATTT ATTAGAGTTA
GCCGATTGTC AAATGCGAGC CCTTGAGCTA GATGGCAAGC GCCTTGGAAA AATTGGGGGG
AATTTAGATC GTCTGCGTTT ACATTCTGAA AAAGCAAAGG TATTACGCGG CGACGCCTCT
AAGTCTGCGT GGTGGGATGG CGTACCCTTT GACAAAATTT TGATAGATGC CCCTTGTTCT
GCCTCGGGAA TTGTTGCTCG ACACCCAGAC ATTCCTTTTT TAAGGCGCGA ATCGGATATT
CCAGTGCTAC AACAAAGACA GCGCGAGATT TTGACCCAGG CCTGGAAAAT GCTGAAGTCT
GGAGGCATTC TTTTATATGT AACCTGCTCT GTGTTTCCTG AGGAGGGTGA GGATCAGGCG
GTTTGGTTTG CTCAGGAACA TAGCAATGCG TTACGATTGG ACGCTCCAGG ACAGCTTTTG
CCAACCGATG CAAATGATGG CTTTTATTAT GCTTTGTTTA AGAAAAATGG GCCATGA
 
Protein sequence
MTDNKKTLSL PLSEAITIAA QAISEVMSGR SLTEVLDELD AHERPIVQSL TFDALRKWVR 
SHELIKQFVP KTPPPEVDHL LSVAIALFIR NDADDKGYAV HTVVDQAVRA CGEYDQTLYA
KGLVNAVLRK VSLALQPVAD KPFYPPDPIA MFVPPWWRAS LKRNYSKDWQ AILFAQAKRA
PLILRVNQKQ YSRDEYRALL TESGIQSKPI NAIAGISLPS ALLLPDAVPV SDLPGFYSGA
VSVQDAGAQL AATLLNPQAD ELILDACAAP GGKTAHLLEL ADCQMRALEL DGKRLGKIGG
NLDRLRLHSE KAKVLRGDAS KSAWWDGVPF DKILIDAPCS ASGIVARHPD IPFLRRESDI
PVLQQRQREI LTQAWKMLKS GGILLYVTCS VFPEEGEDQA VWFAQEHSNA LRLDAPGQLL
PTDANDGFYY ALFKKNGP