Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_2008 |
Symbol | |
ID | 5052322 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | + |
Start bp | 2080509 |
End bp | 2081291 |
Gene Length | 783 bp |
Protein Length | 260 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640472182 |
Product | exodeoxyribonuclease III Xth |
Protein accession | YP_001156783 |
Protein GI | 145590186 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0708] Exonuclease III |
TIGRFAM ID | [TIGR00195] exodeoxyribonuclease III [TIGR00633] exodeoxyribonuclease III (xth) |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTTACGCA TCATTTCCGC GAACCTCAAC GGTATCCGTT CAGCAGTCAA AAAAGGCTTC TTGCCATGGG CAGTTAAACA AAAGGCAGAC TTTATCTGCA TGCAAGAGCT CAAAGCGCAA CGCGATGATT TAGAGGACGC CATCCTCAAT CCAGATGGCC TCCATGGCTT CTTTCATCAT GCCGAGAAAA AAGGCTATAG CGGCTGCGGC ATCTATACAC CCCATAAGCC TGATGAGGTC TTATATGGCT ACGGCAATGA AGAGTTTGAT GCTGAGGGCC GCTATGTAGA GGCACGCTTT AAAGGCTTAT CTGTGATTTC GGTATACATG CCCTCTGGCT CAAGCTCACC AGAACGACAA GAGGCCAAAT ATCGCTATCT CGACAGCTTC TTGCCACACC TGATTGCACT TAAAAATTCT GGTCGAGAAA TCGTTCTCTG TGGCGACGTC AATATTGCCC ATCATGAAAT TGATTTAAAG AACTGGAAAG GTAATCTCAA GAATTCCGGC TTCTTGCCAG AAGAGCGGGC ATGGCTTACC AATCTCTTCG ATCAAGTGGG ATATGTTGAC GTATATCGCG AGCTAGAACC TAAAGCAACA GAAACTTGCT ATACCTGGTG GAGCAATCGT GGCCAGGCTT ATGCAAAAAA CGTGGGGTGG CGCATTGACT ATCACATCAG CACACCTTCA ATAGCAGCTA GCGCTAAAAA AACAGCAGTC TACAAAGATG AGAAATTTTC AGATCACGCA CCACTCACGG TAGATTACGA CTGGAAGCTT TAA
|
Protein sequence | MLRIISANLN GIRSAVKKGF LPWAVKQKAD FICMQELKAQ RDDLEDAILN PDGLHGFFHH AEKKGYSGCG IYTPHKPDEV LYGYGNEEFD AEGRYVEARF KGLSVISVYM PSGSSSPERQ EAKYRYLDSF LPHLIALKNS GREIVLCGDV NIAHHEIDLK NWKGNLKNSG FLPEERAWLT NLFDQVGYVD VYRELEPKAT ETCYTWWSNR GQAYAKNVGW RIDYHISTPS IAASAKKTAV YKDEKFSDHA PLTVDYDWKL
|
| |