Gene Pnuc_1962 details

Gene Information

• Locus tag: Pnuc_1962
• Symbol: lipB
• ID: 5051911
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1
• Kingdom: Bacteria
• Replicon accession: NC_009379
• Strand: -
• Start bp: 2033878
• End bp: 2034522
• Gene Length: 645 bp
• Protein Length: 214 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 640472137
• Product: lipoyltransferase
• Protein accession: YP_001156738
• Protein GI: 145590141
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0321] Lipoate-protein ligase B
• TIGRFAM ID: [TIGR00214] lipoate-protein ligase B

Plasmid Coverage information

• Num covering plasmid clones: 40
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTGTAT TGGTTAAACA TCTAGGAGTA GTAGATTACG TATCAACGTA TGAAGTGATG 
CGCGCATTCA CAAAAGAGCG CAATAGCACT ACACCAGATG AAATTTGGAT TTTGGAGCAT 
CCACCAGTAT TTACATTGGG CCTTGCTGGT GATGCCGGTA ATTTACATTC ACCAAGCAAT 
CAAATTCCGT TAGTGCAGGT GGATCGTGGT GGTGAGATTA CCTATCATGG GCCAGGCCAA 
ATCGTGGTCT ATCTCTTGCT TGATTTGAAG CGGCTGGGGA TTTTTGTAAA AGAGCTGGTC 
TCGCGCATAG AGCAAGCCCT AATTAATACT TTGGCTGATT TTGGTTTGGT GGCCGAAAGA 
CGTTCTGGGG CGCCCGGCAT CTATGTGTCT CTACAACCTG GTATATCACC CGAATGGATA 
GGGGCTAAAG TTGCCGCTTT GGGCCTTAAA GTCTCCAAAA GCTGCTCTTA TCATGGCCTA 
GCCTTGAATG TAGCCACTGA TTTAGAGGCT TTTGGGCGCA TCCACCCTTG CGGGTATGAG 
GGCTTAAAGA CGGTCGATAT GCAAACTCTC GGGATCAAGG ACAATATAGA CACTATTAGC 
CAAAGGCTTT TGGAGCACCT ACAAAAGCAA CTCATGCCAA CATGA 

 

Protein sequence

MTVLVKHLGV VDYVSTYEVM RAFTKERNST TPDEIWILEH PPVFTLGLAG DAGNLHSPSN 
QIPLVQVDRG GEITYHGPGQ IVVYLLLDLK RLGIFVKELV SRIEQALINT LADFGLVAER 
RSGAPGIYVS LQPGISPEWI GAKVAALGLK VSKSCSYHGL ALNVATDLEA FGRIHPCGYE 
GLKTVDMQTL GIKDNIDTIS QRLLEHLQKQ LMPT