| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1956 |
|---|
| Symbol | |
|---|
| ID | 5052223 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | - |
|---|
| Start bp | 2029054 |
|---|
| End bp | 2030538 |
|---|
| Gene Length | 1485 bp |
|---|
| Protein Length | 494 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640472131 |
|---|
| Product | ammonium transporter |
|---|
| Protein accession | YP_001156732 |
|---|
| Protein GI | 145590135 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0004] Ammonia permease |
|---|
| TIGRFAM ID | [TIGR00836] ammonium transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTAACTT GGATGAAACG ACTTGTTGCT GGTGGTGCGA TGGCCTTGGC TATTGGCGCT
ACTGGTGTAA TAGTGACTTC ACCAGCGCAT GCTGATGAAG TTAAAAAACC AGCAGTTACT
GCTCCTGCCG CAACTCCAGC AGCCGCAGAA CCTGCACCCG TTCTTTGCTC TGAAAAGTGC
AATAAAGGTG ATACTGCCTG GATGATGGTT TGTACAGCGT TAGTGTTGTT GATGACGCTT
CCTGGCTTGG CTTTGTTCTA CGGCGGCTTA ACACGTAGCA AGAATATCTT GTCTATCTGT
ATGCAATGTT TCATGGTCTT TTCTATGATC ACAGTGTTAT GGGCTATCTA TGGCTATAGC
TTTGCGTTCA CGGAAGGCGG AGCATTCGTT GGTGGATTAG ATCGTCTGTT CTTGGGTGGT
ATGAATCCAG ATTCAGTAGC AGCAACCTTT AGTAAAGGTG TTGTGATTCC TGAATACGTA
TTCATGGCTT TCCAAGCAGT GTTCGCAACC ATCACTTGCT GTTTGATCAT TGGTTCTTTT
GCTGAGCGCG CTAAGTTCTC TGCAATCTTA GTATTCATGA TCATTTGGTT CACATTTAGC
TACTTGCCAA TCGCTCACAT GGTTTGGTTC TGGCCTGGTC CTGATGACAT CAAAGATGCT
GCATCACTCG AAGCAATTAC TGCTCGTGCT GGTTGGTTGT GGCAAAAAGG TGTTCTCGAC
TTTGCTGGTG GTACTGTTGT GCATATCAAT GCTGCGGTCG CTGGTTTGGT TGGCTCCTTT
GTTATCGGCA AGCGTTTGGG CTACGGTAAA GAAGCAATGA AGCCACACAA CTTAGTTTAT
GTAATGACTG GCGCTGCTCT CTTGTGGTTC GGCTGGTTTG GTTTCAATGC TGGTTCAGCA
CTCGAAGCAA ACGGTAGCGC TGCATTGGCT TTCGTAAATA CTTATTTAGC AACTGCTGCT
GCTGTATTGG GCTGGTCTGT AGCTGAGTGG GTTCTCAAAG GCAAGCCTTC GATGTTGGGC
GCTGCTTCTG GTTGCGTAGC TGGTTTGGTT GCTATTACTC CTGCAGCTGG TTTTGCTGGC
CCAATGGGCT CAATCATTAT TGGTTTAATC GCTGGTGTAG TTTGCCTCTG GGGTGTTACT
GGTCTCAAGA AGATTTTGGG TTCAGACGAT ACTTTGGACG TATTCGGTGT TCACGGCGTA
GGCGGTATTA CTGGTGCATT GTTGACTGGT GTATTTGCTG ATCCAGCATT GGGTGGCTCT
GGCATTTGGG ATTACGTAGC AAATGCAGTT GCTCCTGACT ACTCTATTGC TAGCCAATTG
TGGATTCAGG CGCAAGGCGT GATTACCACT GTTATTTGGT CAGGCGTAGT TTCTTTCGTA
GCCTTCAAAT TGATCGATAT CGTGATCGGT TTGCGTGTAA AGGAAGAAGA AGAGCGCGAA
GGCTTGGATA TCAGCTCACA TGGTGAGTCT GCTTACGAGT CTTAA
|
|---|
| Protein sequence | MLTWMKRLVA GGAMALAIGA TGVIVTSPAH ADEVKKPAVT APAATPAAAE PAPVLCSEKC
NKGDTAWMMV CTALVLLMTL PGLALFYGGL TRSKNILSIC MQCFMVFSMI TVLWAIYGYS
FAFTEGGAFV GGLDRLFLGG MNPDSVAATF SKGVVIPEYV FMAFQAVFAT ITCCLIIGSF
AERAKFSAIL VFMIIWFTFS YLPIAHMVWF WPGPDDIKDA ASLEAITARA GWLWQKGVLD
FAGGTVVHIN AAVAGLVGSF VIGKRLGYGK EAMKPHNLVY VMTGAALLWF GWFGFNAGSA
LEANGSAALA FVNTYLATAA AVLGWSVAEW VLKGKPSMLG AASGCVAGLV AITPAAGFAG
PMGSIIIGLI AGVVCLWGVT GLKKILGSDD TLDVFGVHGV GGITGALLTG VFADPALGGS
GIWDYVANAV APDYSIASQL WIQAQGVITT VIWSGVVSFV AFKLIDIVIG LRVKEEEERE
GLDISSHGES AYES
|
|---|
| |