| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1919 |
|---|
| Symbol | ipk |
|---|
| ID | 5052765 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | + |
|---|
| Start bp | 1998201 |
|---|
| End bp | 1999085 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640472093 |
|---|
| Product | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase |
|---|
| Protein accession | YP_001156695 |
|---|
| Protein GI | 145590098 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1947] 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR00154] 4-diphosphocytidyl-2C-methyl-D-erythritol kinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAAAC AGCCTCAACA GTCTTTAACG CTTCGCTCAC CAGCCAAGCT CAATTTATTT
CTGCACATTG TTGGCCAACG ACCTGATGGC TATCATCTTC TGCAATCTGT TTTTCAGTTA
ATTGATTGGA CTGATACCGT TCACTTAAAA CGGATTCCAG AAAATGAAGT TCGTCGCATT
AATCCGATAC CCGACGTGTC ACCAGAACAA GATTTAGTTG TGCGCGCTGC AAAACTAGTA
AAGGATTTTT GCAAGATAGA TTTGGGTGTT GAAATCGACT TGAAAAAAGA AATTCCTATG
GGGGCAGGGC TGGGAGGCGG CTCATCGGAT GCAGCAAGCA CCTTGATAGG CTTAAATACG
CTTTGGAATC TTGATTTAGA TAAAAAGACG CTGTCCAACC TAGGTTTGAA ACTGGGGGCA
GATGTGCCCT TTTTCATTTT TGGTCAAAAT GCGTTTGTTG AAGGAATTGG TGAACAAATT
CAAGAAATCT CCCTTGAAAA TCGGGATTTT CTGGTCATTT TTCCCAACCG AGCTATCCCA
ACAGTGAGCA TTTTTCATGA CCCGGAATTG ACCCGAGACC ATGCTCCGAT TACAATTGAT
GGCTTTCTTG CATCGCCGTT GTCAAATCAG ATCAATGATT GTCAGGCAGT AGCGATGCGA
ATTTGTCCTG AAGTGAAGCA AGCTTTGGAT TGGGTTAGTC AGGCGTTACC GGGCTCCGCG
CCCCGTATGT CAGGCTCCGG GAGTAGCGTT TTTGCCGTCT TAGACCCTAA GACCGATAGC
GTAAAACTGG AAAATCTTTT ACAAAGTCTT CCTAAGGGGT GGATAGGTCG GGTTGTTCGG
GGGCTAAATA AAAATCCCGC TTACAATTTG ATTTCTTCAG ATTGA
|
|---|
| Protein sequence | MSKQPQQSLT LRSPAKLNLF LHIVGQRPDG YHLLQSVFQL IDWTDTVHLK RIPENEVRRI
NPIPDVSPEQ DLVVRAAKLV KDFCKIDLGV EIDLKKEIPM GAGLGGGSSD AASTLIGLNT
LWNLDLDKKT LSNLGLKLGA DVPFFIFGQN AFVEGIGEQI QEISLENRDF LVIFPNRAIP
TVSIFHDPEL TRDHAPITID GFLASPLSNQ INDCQAVAMR ICPEVKQALD WVSQALPGSA
PRMSGSGSSV FAVLDPKTDS VKLENLLQSL PKGWIGRVVR GLNKNPAYNL ISSD
|
|---|
| |