| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1900 |
|---|
| Symbol | |
|---|
| ID | 5053864 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | + |
|---|
| Start bp | 1978285 |
|---|
| End bp | 1979805 |
|---|
| Gene Length | 1521 bp |
|---|
| Protein Length | 506 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640472074 |
|---|
| Product | threonine dehydratase, biosynthetic |
|---|
| Protein accession | YP_001156676 |
|---|
| Protein GI | 145590079 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1171] Threonine dehydratase |
|---|
| TIGRFAM ID | [TIGR01124] threonine ammonia-lyase, biosynthetic, long form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAACGA ACTATTTAAA GAAAATTTTA TCGGCTCGCG TCTATGACGT AGCTAGAGAA
ACCGAGCTCC AAGTAGCTCC CGAACTTACC AGGCGATTGG GCAACCAGGT CTTACTGAAA
AGGGAGGATA ACCAGCCGGT TTTTTCCTTC AAATTGCGTG GCGCCTATAA CAAAATGGCC
CATTTACCCT TGGAAGCCCT AAAACGCGGG GTAATTGCTG CTTCTGCAGG CAATCATGCA
CAAGGGGTAG CCCTTTCTGC CGCCAAAATG AAGTGCAAAG CAGTCATCGT GATGCCGGTT
ACCACCCCTA GCGTCAAAAT TGATGCGGTA AAGGCCCGTG GCGGCTCTTG GGTCGAAATT
ATTCTGCACG GCGAATCCTA TAGCGACGCT TTTAAGTATT CAGAAGTTCT GGGTAAAAAA
CGCGGCCTCA CCTTCGTTCA CCCGTTTGAT GATCCTGACG TCATTGCCGG GCAAGGAACC
ATTGCTCACG AAATTTTTAC GCAATATGAA AAACCCATTG ATGCAGTATT TGTGGCAATT
GGTGGTGGCG GCTTAATTTC CGGAATTGGT GAATACATCA AAGCAGTGAG CCCAAAGACT
AAAGTGATTG GCGTTCAAGC ATCGGACTCT GATGCCATGA ACCAATCTCT CAAAGCAAAC
AAGCGCATTG AAATGAAAGA TGTCGGTTTA TTCTCTGACG GCACTGCAGT AAAGCTAGTA
GGCAAAGAAA CCTTTCGCAT TTGCAAAAAA GTGGTTGATG AAATCATCAC CGTTGATACC
GATGAAATCT GCGCAGCAAT TAATGATGTG TTCACTGATA CCCGTAGCAT CCTTGAACCA
GCAGGCGCAC TAGCTATTGC AGGCATGAAG AAGTACGTCG AAAAGAAGCG TATTAAGAAG
AAAACTTTAG TGGCTGTGGC TTGTGGAGCC AATATGAACT TTAGCCGCCT GCGCTTTGTA
GCTGAACGTG CAGACGTTGG CGAGTTCCGT GAAGCGGTAT TTGCTGTCAC CATTCCTGAA
GAGCGAGGAT CACTCAAGCG CTTTTGTGAG TTACTTGGAA AACGCAACGT TACCGAATTT
AATTATCGAA TTGGCAACCA AAGTGAAGCA CATATTTTTG TTGGTATTAG CACGCAAAAA
TCTGGTGATA GCGAAGTCAT TGCCAAGCAT TTCCGCAAAG CCAAATTTGC AACTATCGAT
CTGACGCATG ATGAGTTAGC CAAGTCTCAC TTACGCCACA TGGTGGGTGG ACATTCAGCA
CTCGCAAATG ATGAGCTGTT GTACCGCTTT GAATTTCCAG AGCGCCCAGG TGCTTTGATG
AAGTTCTTGA CCAGCATGGC GCCCAATTGG AATATCAGCT TATTTCACTA CCGCAATCAT
GGTGCAGACT ATGGTCGCAT TCTAGTAGGC CTACAAGTTC CTAAGAATGA GCAAAAGAAA
TTCCAAAACT TCTTGGCTAG TCTTGGCTAT CCCCACTGGG ATGAGACCAA CAATCCTGCC
TACCATCTCT TCCTTAAATA G
|
|---|
| Protein sequence | MATNYLKKIL SARVYDVARE TELQVAPELT RRLGNQVLLK REDNQPVFSF KLRGAYNKMA
HLPLEALKRG VIAASAGNHA QGVALSAAKM KCKAVIVMPV TTPSVKIDAV KARGGSWVEI
ILHGESYSDA FKYSEVLGKK RGLTFVHPFD DPDVIAGQGT IAHEIFTQYE KPIDAVFVAI
GGGGLISGIG EYIKAVSPKT KVIGVQASDS DAMNQSLKAN KRIEMKDVGL FSDGTAVKLV
GKETFRICKK VVDEIITVDT DEICAAINDV FTDTRSILEP AGALAIAGMK KYVEKKRIKK
KTLVAVACGA NMNFSRLRFV AERADVGEFR EAVFAVTIPE ERGSLKRFCE LLGKRNVTEF
NYRIGNQSEA HIFVGISTQK SGDSEVIAKH FRKAKFATID LTHDELAKSH LRHMVGGHSA
LANDELLYRF EFPERPGALM KFLTSMAPNW NISLFHYRNH GADYGRILVG LQVPKNEQKK
FQNFLASLGY PHWDETNNPA YHLFLK
|
|---|
| |