| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1849 |
|---|
| Symbol | |
|---|
| ID | 5052325 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | - |
|---|
| Start bp | 1925434 |
|---|
| End bp | 1927104 |
|---|
| Gene Length | 1671 bp |
|---|
| Protein Length | 556 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640472023 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001156626 |
|---|
| Protein GI | 145590029 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAACAT CAACTAAAGC AGCCCCAATG ACCGCCGAAG AGCGCAAAGT TATTTTTGCT
TCCTCATTAG GTACGGTTTT TGAGTGGTAC GACTTTTACT TGTACGGTTC ACTTGCGGCA
ATTATTGCTA AGCAATTCTT CTCAGGACTA GATTCTGGTT CTGCGTTCAT TTTCGCTTTG
CTTGCGTTTG CCGCTGGTTT CATCGTGCGT CCATTTGGCG CGTTGGTGTT TGGTCGTTTA
GGTGATTTGA TTGGTCGTAA ATACACCTTC TTGGTCACCA TCCTCTTGAT GGGTGGCTCA
ACCTTCATTG TGGGCATTCT GCCTAACTAC GCCACTATCG GCGTTGCTGC TCCTGTTATC
TTGATCGCTC TACGTATGCT TCAAGGCTTG GCTTTGGGTG GCGAGTACGG CGGTGCCGCT
ACTTATGTTG CAGAACACGC ACCTCATGGT CGCCGTGGCG CATACACCGC TTGGATTCAG
ACAACCGCTA CTTTGGGTTT GTTCCTTTCC TTGCTCGTCA TTTTGTTTAC CCGTGAATTC
ACTGGGCCAG ACTTTGACGT GTGGGGCTGG CGTGTTCCTT TCATCGTTTC TATCGCATTG
TTGGCTGTTT CTGTATGGAT TCGTTTATCC ATGAATGAGT CACCAGCTTT CAAGAAGATG
AAAGAAGAGG GCAAGTTATC TAAAGCACCT TTGACAGAAT CTTTTGGTCA ATGGAAAAAC
TTGAAGATTG TTATCTTGGC ATTGTTTGGG TTAGTAGCTG GTCAGGCAGT GGTTTGGTAT
ACCGGTCAGT TCTATGCACT GTTCTACCTT ACTCAAGTAT TGAAGGTAGA TCCTAAGACG
GCTAACTTGT TGATTGCTGC TTCATTGGTT ATCGGTACCC CGTTCTTCGT AGTGTTTGGT
AGTTTGTCTG ACAGGATCGG CCGTAAAGTC ATCATCATGG GCGGCTTGTT ATTGGCTGTA
ATCACTTACA TCCCTAACAC TCCTGTTTCT GTGTTCAATG CTTTGACTCA CTTCGCTAAC
CCAGCGTTAG AAAAAGCAAT GGCAACAGCG CCAGCAACCA TTACCGCTGA TGTCAACGAG
TGCTCCTTCC AGTTCAATCC AACTGGCACA GCGAAGTTCA CTAGCTCTTG CGATATCGCA
AAACAAGTGA TGGCAGCTAA CTCTGCTAGC TACACTACTA TTCCAGCTCC AGCTGGCAGC
GTTGCTGTGG TCAAGATTGG TGATGTAGAG ATTCCTGGCT ACTCAGCTAA GGGATTGGAT
CCTGCTGAAG CAAAAGCGAA AGATGCTGAG TTTAAGAAGG CAATTCGTGA TGCTTTAACT
AAAGAAGGTT ATCCAGTTAA AGCAGATCCA GCGCAAATTA ACTACTTCGC TGTATTGTGC
TTGTTGGTGT ACTTGGTACT CCTCGTAACG ATGGTTTATG GACCCATCGC TGCGATGTTG
GTTGAGATGT TCCCAACTCG CATTCGTTAC ACCTCTATGT CTTTGCCATA CCACATTGGT
AACGGTTGGT TCGGCGGCCT CTTGCCAACG ATCTCCTTTG CCTTGGTTGC GCAAAACGGT
AACATTTACT ACGGTCTCTG GTACCCAATC ATCATCGCTG CGATGACATT GGTAATCGGT
ACACTGTTTG TACGTGAAAC TAAAGACGTA GATATCTATG CACGTGACTA A
|
|---|
| Protein sequence | MSTSTKAAPM TAEERKVIFA SSLGTVFEWY DFYLYGSLAA IIAKQFFSGL DSGSAFIFAL
LAFAAGFIVR PFGALVFGRL GDLIGRKYTF LVTILLMGGS TFIVGILPNY ATIGVAAPVI
LIALRMLQGL ALGGEYGGAA TYVAEHAPHG RRGAYTAWIQ TTATLGLFLS LLVILFTREF
TGPDFDVWGW RVPFIVSIAL LAVSVWIRLS MNESPAFKKM KEEGKLSKAP LTESFGQWKN
LKIVILALFG LVAGQAVVWY TGQFYALFYL TQVLKVDPKT ANLLIAASLV IGTPFFVVFG
SLSDRIGRKV IIMGGLLLAV ITYIPNTPVS VFNALTHFAN PALEKAMATA PATITADVNE
CSFQFNPTGT AKFTSSCDIA KQVMAANSAS YTTIPAPAGS VAVVKIGDVE IPGYSAKGLD
PAEAKAKDAE FKKAIRDALT KEGYPVKADP AQINYFAVLC LLVYLVLLVT MVYGPIAAML
VEMFPTRIRY TSMSLPYHIG NGWFGGLLPT ISFALVAQNG NIYYGLWYPI IIAAMTLVIG
TLFVRETKDV DIYARD
|
|---|
| |