| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1828 |
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| Symbol | |
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| ID | 5051961 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 1909463 |
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| End bp | 1909975 |
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| Gene Length | 513 bp |
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| Protein Length | 170 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640472001 |
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| Product | fimbrial protein pilin |
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| Protein accession | YP_001156605 |
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| Protein GI | 145590008 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4968] Tfp pilus assembly protein PilE |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.10224 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGGGCA CAAAGAATGC AGTTCAGGAC CACCATAAAG AGGCGGGATT TACTCTAATT
GAAGTCATGG TTGTTGTTGC AATCATTGGT ATTTTAGTTG CGGTTGCGGT GCCGCAATAT
CAAGACTATA TTGCGCGTAG TCGCGTAGTT GAGGGAATGA ATTTATCATC TAGCGCCAAA
CTTGCAGTAA CGGAAGCATT TGCGAGTCGA GGGACAGTTC CTATGGATGA TGCGACTAAT
GGGTCGTTTA CATTTGCCCC AACACGGAGT GTAAAGCTCA TTGAAATAAC TCCTTCTGGG
GCGATAGCCA TCGACTATCA AATTAGTGTT GCTCCAGAGG GCAAAAATAC GCTTCACCTC
ATCCCAACGA ATGAGCCTGA TGCTAATACC CCGAAACCAG TTGATTTATC AAAGCCAGAA
GGCGCCACTT GGGCAGGTGG TTGGTCATGT AGGTCTACCG AAACAAATCT TCTTTCTCAG
TTGCTGCCAT CCGAATGCAG AATTAGCAAA TAA
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| Protein sequence | MKGTKNAVQD HHKEAGFTLI EVMVVVAIIG ILVAVAVPQY QDYIARSRVV EGMNLSSSAK
LAVTEAFASR GTVPMDDATN GSFTFAPTRS VKLIEITPSG AIAIDYQISV APEGKNTLHL
IPTNEPDANT PKPVDLSKPE GATWAGGWSC RSTETNLLSQ LLPSECRISK
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