| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1827 |
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| Symbol | |
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| ID | 5052062 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 1907098 |
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| End bp | 1909383 |
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| Gene Length | 2286 bp |
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| Protein Length | 761 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 640472000 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001156604 |
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| Protein GI | 145590007 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family
[COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0460239 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATCCCC AATTACAGAT GATGTTGCAA CAGGCTTTGC AATCCTTTCA AAATGGAAAT
TATGAGAGGG CAGATTCCAT CTTAGTGAAA ATCATTAAAG CGGATTCAAA AAATTTACCA
GCACTTCATG TCTTGGGACT CATTAAGGCA TCTCAAAAAA AATATCAAGA AGCCGCTGAC
CTACTGAGCA AGGCCGCACG TTTAAATCCC AACGAAGCAT CTATTCAATA CAATTTAGCA
AAATCTTTAG CAGATTGCGG CTCCTTCCGA GAGTCTATCC CTCATCATAA AAAAGCAGTT
GAGTTGATGC CTAATAATCC AGAGGCATTG CTTAATTACG CAATTACATT GGGCGCTTTA
GCAAGCTATG AAGAGGCTTT GAATGTTTTG GATAAAGCTA TTCTTATTCA GCCAAATTAT
GCGGAGGCTT TTTTAAATCA CGGATTAATC CTTGCGGCAC TGAATCGCTT AGAGGATGCA
AATATTTCAT TTGATTCAGC CATTAGATTA AATCCAAGCT CAAGTGAATC TTGTTTCAAC
AAAGGCATTG TCTTGACGAA GCTTAACAAG TTAGACGAAG CTCTTAATGC CTATATAAGT
GCAATTCACT TAAATCCAGA TTATCTTGAT GCTTGGTTAA ATCGAGGTGT CGTTCTTCAT
GCTCTTAAGT GCTATGGTGA GGCTATTGAT GCTTTCAACA TGGTCATCAA ATTAAATCCA
AATCATTTTC AGGCTTGGTT TAACAAGGGA GCTAGCTTAA AGGAGTTGCA ACGTTATGAA
GAAGCCCTCA TTGCTTATGA CAACTCAATT AACTTAAATG TAGAGTATTC AGATGCATGG
GTCAATAAGG CGGCAGCTCT CCATGAACTC AAACGGTTCA ACGAATCCAT AGAAGCCTAC
CAGCATGCAC TAAAGCTCAA TCCCAAAATT GATTGGGTTG AAGGGGATCT CCTTCATACC
AAGATGAAAG TATGTTTATG GGATGACTTT GACGAAAGTC TTGCAGATTT AATGAGTAAA
GTGCGAACAG GCGAAAAAAG CATTACTCCT TTTCCATTAT TATCGCTAGT TGATGATGGG
TTACTCCAGA AGCAGTGCTC AACTATTTAC GCTAATAGTA AGTTTCCGTT GAATGCCAAG
CTAGGACCCC TAAATAAACT GCTACAAAAA GAGAGAATTC GTATTGGATA TTTTTCAGCT
GATTTTAGAA ATCATGCAGT ATCAGCGCTG ACTGCTCAAC TGTTTGAACT GCACAATAAA
CAGAAGTTTG AAATTATTGC CTTTTCATAT GGCCCTGATG ATCAAAGTCT AATGAGGAAT
AGATTATCAA AAGCTTTTGA TCAATTTTTA GATATCGGTT CTCAGTCAGA TATGCAAATA
GCCAAGCTTT CTAGAGATTT GGGTATTGAT ATCGCTATTG ATTTAGGTGG GTTTACCACT
GACAGTCGGC CTGGTATTTT TTCCTATCGT GCCGCCCCTA TACAAGCTGG ATACATTGGT
TACTTAGGGA CCATGGGCGC TAATTACATG GATTATCTGT TTGCAGATAA GACAATCATT
CCTCATGAAG CTGAACAATA TTACTCAGAA AAAATCGTAT ATTTGCCAAG TTATCAGGTT
AATGATACGA ACAGGAAAAT ATCAGATGAA ATTTTTTCCC GCGAGAGTCT AGGGCTACCA
AAAGACGAAT TTGTATTTGC ATGCTTTAAC AATAATTACA AAATACTACC GGCAACTTTT
AATAGCTGGA TGAATATATT GAAGGCCACC CCAAAAAGTG TTCTTTACTT ATATGCTGAT
AATCCTTGGT CTAAAGATAA CTTGATGAAA GAGGCTGAAG CAAGGGGTGT AAAGGCGGAT
AGGCTGATAT TTGGCGGCCG AATTGATGCT GATCAGTATC TAGCACGCTA TCGTGCTTGC
GATTTATTTT TGGATACTGC CCCTTATAAC GCAGGGACAA CAGCCAGCGA TGCCTTGTGG
GCGGGCCTTC CAGTTCTCAC ATTAATAGGA CAGTCTTTCC CCAGTCGTGT TGCTTCTAGC
CTCTTAAATG CAGTTGGATT ACCAGAGCTT GTCACTAGTA GCGCCGCTGA ATATGAAATT
AGGGCGATTG AGCTAGCTAT GAATCCTGAA ATGATGTCTG CAATAAAGCT GAAATTGGTA
AATAATCAAC TTACTACTTT ATTGTTTGAT ACTCCTCGTT TTACTGAGAG CATTGAGGCG
GTGTACACCA AAATGTATGG GGACTATCAA AGTAACGTAG GACCCAATCA CATTTCTCTC
GGTTAG
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| Protein sequence | MNPQLQMMLQ QALQSFQNGN YERADSILVK IIKADSKNLP ALHVLGLIKA SQKKYQEAAD
LLSKAARLNP NEASIQYNLA KSLADCGSFR ESIPHHKKAV ELMPNNPEAL LNYAITLGAL
ASYEEALNVL DKAILIQPNY AEAFLNHGLI LAALNRLEDA NISFDSAIRL NPSSSESCFN
KGIVLTKLNK LDEALNAYIS AIHLNPDYLD AWLNRGVVLH ALKCYGEAID AFNMVIKLNP
NHFQAWFNKG ASLKELQRYE EALIAYDNSI NLNVEYSDAW VNKAAALHEL KRFNESIEAY
QHALKLNPKI DWVEGDLLHT KMKVCLWDDF DESLADLMSK VRTGEKSITP FPLLSLVDDG
LLQKQCSTIY ANSKFPLNAK LGPLNKLLQK ERIRIGYFSA DFRNHAVSAL TAQLFELHNK
QKFEIIAFSY GPDDQSLMRN RLSKAFDQFL DIGSQSDMQI AKLSRDLGID IAIDLGGFTT
DSRPGIFSYR AAPIQAGYIG YLGTMGANYM DYLFADKTII PHEAEQYYSE KIVYLPSYQV
NDTNRKISDE IFSRESLGLP KDEFVFACFN NNYKILPATF NSWMNILKAT PKSVLYLYAD
NPWSKDNLMK EAEARGVKAD RLIFGGRIDA DQYLARYRAC DLFLDTAPYN AGTTASDALW
AGLPVLTLIG QSFPSRVASS LLNAVGLPEL VTSSAAEYEI RAIELAMNPE MMSAIKLKLV
NNQLTTLLFD TPRFTESIEA VYTKMYGDYQ SNVGPNHISL G
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