| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1814 |
|---|
| Symbol | |
|---|
| ID | 5052031 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | - |
|---|
| Start bp | 1894023 |
|---|
| End bp | 1894919 |
|---|
| Gene Length | 897 bp |
|---|
| Protein Length | 298 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640471987 |
|---|
| Product | phosphoribosylaminoimidazole-succinocarboxamide synthase |
|---|
| Protein accession | YP_001156591 |
|---|
| Protein GI | 145589994 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0152] Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase |
|---|
| TIGRFAM ID | [TIGR00081] phosphoribosylaminoimidazole-succinocarboxamide synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.000663783 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGCTT TGTATGCTAC CTCTATTAAG TCGCTGCCTT TGCTCTCAAA GGGCAAAGTG
CGTGATGTTT ATGCACTGGG TGATGACAAG CTCTTGATGA TCACTACGGA TCGTTTATCT
GCTTTTGATG TTGTGATGGG TGAGCCCATT CCTGAAAAAG GCATTCTTCT CAATCAAATG
GCCAATTTCT GGTTTGATAA GTTAGGAAAA GTCATTCCAA ATCATTTAAC TGGAATCGAT
CCTGCGACTG TAGTGCCGGC AGATGAGGTT GAGCAAGTCA AAGGACGTGC AGTGGTTGCT
AAGCGTTTAA AGCCAATTTT GGTGGAAGCA GTTGTGCGTG GCTATTTGGC CGGAAGCGGT
TGGAAAGATT ACAAAGAAAC TGGTAAGGTC TGTGGAATCA CATTACCTGC TGGCTTAGAG
AATGCTCAAA AATTACCAGA ACCCATTTTT ACTCCAGCAG CAAAAGCCGA CGTGGGCGAA
CACGATGAAA ATATTTCTTT TGAAAAAGTC ATTGAACTGA TTGGCGAGAA ACTTGCGAAT
CAAATTCGTG AGGTCAGCAT TCGTCTATAT AAAGAGGCTT CTGAGTATGC GGCCACAAGA
GGCATCATCA TTGCAGATAC CAAATTTGAA TTTGGCTTAG ATGATGCGGG TCAACTAGTC
TTAATGGATG AAATTCTGAC TGCCGACTCT TCACGTTTCT GGCCTGCCGA AACTTACTAT
GTAGGGTCAA ATCCCCCGTC CTATGACAAG CAATTTGTAC GTGACTGGCT TGAGACGGCG
CAGGTGAATG GAAAATTGTG GCCTAAAACA GCCCCGGCAC CCCAATTACC GGCAGATGTG
ATTGAAAAGA CGGCTCAAAA GTACCGCGAA GCCTTAGCGC GTTTAACTCA GGGATAA
|
|---|
| Protein sequence | MPALYATSIK SLPLLSKGKV RDVYALGDDK LLMITTDRLS AFDVVMGEPI PEKGILLNQM
ANFWFDKLGK VIPNHLTGID PATVVPADEV EQVKGRAVVA KRLKPILVEA VVRGYLAGSG
WKDYKETGKV CGITLPAGLE NAQKLPEPIF TPAAKADVGE HDENISFEKV IELIGEKLAN
QIREVSIRLY KEASEYAATR GIIIADTKFE FGLDDAGQLV LMDEILTADS SRFWPAETYY
VGSNPPSYDK QFVRDWLETA QVNGKLWPKT APAPQLPADV IEKTAQKYRE ALARLTQG
|
|---|
| |