| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1792 |
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| Symbol | secF |
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| ID | 5053169 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | + |
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| Start bp | 1870383 |
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| End bp | 1871357 |
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| Gene Length | 975 bp |
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| Protein Length | 324 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640471965 |
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| Product | preprotein translocase subunit SecF |
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| Protein accession | YP_001156569 |
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| Protein GI | 145589972 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0341] Preprotein translocase subunit SecF |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.105598 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAATTTT TTAGAATCAA AAAAGATATT CCTTTCATGC GCCATGCGTT GGTGCTGAAT
GCGATTTCCT TCATTACTTT TTTAGCGGCC GTCTTTTTCC TTTGGCATAA CGGCTTGCAC
CTCTCTATCG AATTTACTGG TGGTACGGTA ATGGAAGTAA GTTACCCCCA AACGGCACCA
CTCGAATCCA TTCGCGCTAA GGTTGAAAAG CTCGGCTATG CCGATACGCA AATTCAGAAT
TTTGGTAGCT CACGTGATGT GATGATTCGC CTGCCCTTAC AAAAAGATGC TGAAGGTAAG
CTTATTTCAT CTGCAGATCA AAGCAATGCT GTAATGCAAG TGCTTGATCC GACTACTTCA
GGTGTAAAAC TCCAAAGGGT TGAATTCGTT GGCCCACAAG TCGGTCAAGA ACTAGCGATT
GATGGCCTTA AGGCGTTGAT CTTCGTTGTT ATCGGCATTG TGCTGTATCT ATCTTTCCGC
TTTGAGTGGA AATTTGCCCT CGCCGGCATC ATTGCCAACT TACATGATGT AGTAATTATT
CTTGGATTTT TCGCCTTCTT CCATTGGGAA TTTTCTCTTT CAGTATTGGC GGCAGTCCTC
GCGGTACTCG GTTACTCAGT TAATGAGTCA GTGGTGATCT TTGACCGTAT TCGTGAAAAT
TTCCGTAAGT ATCGCAAGAT GAACACCCGT GAGATTATTG ATAATGCGAT TACAAGTACG
ATCAGCCGTA CCGTCATTAC TCACGGCAGC ACTGAAATGA TGGTCTTGGC AATGCTGATC
TTTGGCGGCC CAACCCTCTT TTACTTTGCC TTAGCGCTGA CGATTGGTAT TTTGTTTGGT
ATTTATTCTT CAGTCTTCGT TGCTGCAGCA CTGGCAATGT GGCTTGGTGT TACTAGAGAA
GATTTAGTGA AGGGCGATAA AAAGCCAGAC GATAATGCTC GTAACGATGA CCCGAATTTT
GGTGCTCGGG TTTAA
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| Protein sequence | MEFFRIKKDI PFMRHALVLN AISFITFLAA VFFLWHNGLH LSIEFTGGTV MEVSYPQTAP
LESIRAKVEK LGYADTQIQN FGSSRDVMIR LPLQKDAEGK LISSADQSNA VMQVLDPTTS
GVKLQRVEFV GPQVGQELAI DGLKALIFVV IGIVLYLSFR FEWKFALAGI IANLHDVVII
LGFFAFFHWE FSLSVLAAVL AVLGYSVNES VVIFDRIREN FRKYRKMNTR EIIDNAITST
ISRTVITHGS TEMMVLAMLI FGGPTLFYFA LALTIGILFG IYSSVFVAAA LAMWLGVTRE
DLVKGDKKPD DNARNDDPNF GARV
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