Gene Pnuc_1741 details

Gene Information

• Locus tag: Pnuc_1741
• Symbol: lspA
• ID: 5052340
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1
• Kingdom: Bacteria
• Replicon accession: NC_009379
• Strand: +
• Start bp: 1813567
• End bp: 1814055
• Gene Length: 489 bp
• Protein Length: 162 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 640471914
• Product: lipoprotein signal peptidase
• Protein accession: YP_001156518
• Protein GI: 145589921
• COG category: [M] Cell wall/membrane/envelope biogenesis; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0597] Lipoprotein signal peptidase
• TIGRFAM ID: [TIGR00077] lipoprotein signal peptidase

Plasmid Coverage information

• Num covering plasmid clones: 34
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCATCT CATTTCTTCG CTGCCTAGCA ATTGCCTCAA TCACTCTACT GTTAGATCAG 
ATGAGTAAGT GGCTTGCGCT TACCAATCTC CAAATGGGGG TTCCAGAACC CGTGTTCCCA 
TTTTTAAATT GGTTGCTCCT CTTTAATCCT GGTGCTGCAT TTTCATTTCT GGCGCAAGGC 
TCGGGTTGGC AGCGTTGGTT TTTTACTTTC CTTGGCGTGC TAGCGAGCAT CTACATAGTG 
GTTATGCTTC GCAAGAATCA ACAGGATGGC TTACTTTGCG TGGCTCTGAG CTTGATCCTA 
GGGGGTGCAC TGGGCAATGT CTTAGATCGC TTGATGTATG GCGCAGTTGT GGATTTTATT 
GATCTTCATT ACGCCAATTG GCATTGGCCT GCATTCAATG TTGCTGATAG TGCCATTTGC 
ATTGGGGCTG TACTCATTAT TTTCGGCGAA TTACATAAGT CATTTGGCAA ATCTCCTCAA 
TCCCATTAA 

 

Protein sequence

MSISFLRCLA IASITLLLDQ MSKWLALTNL QMGVPEPVFP FLNWLLLFNP GAAFSFLAQG 
SGWQRWFFTF LGVLASIYIV VMLRKNQQDG LLCVALSLIL GGALGNVLDR LMYGAVVDFI 
DLHYANWHWP AFNVADSAIC IGAVLIIFGE LHKSFGKSPQ SH