Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_1647 |
Symbol | |
ID | 5053689 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | - |
Start bp | 1712017 |
End bp | 1713417 |
Gene Length | 1401 bp |
Protein Length | 466 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 640471819 |
Product | DNA polymerase III, epsilon subunit |
Protein accession | YP_001156424 |
Protein GI | 145589827 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0322] Nuclease subunit of the excinuclease complex [COG2176] DNA polymerase III, alpha subunit (gram-positive type) |
TIGRFAM ID | [TIGR00573] exonuclease, DNA polymerase III, epsilon subunit family |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGATATTA ATGAGGTCTC GTACCCGGAT TTAGCTTTTG TAGACATAGA AACTACTGGG TCTCATTTTG ATCGGGATCG CATTACAGAA ATTGGCATCA AAACACTAGC TAACGATGGA ATTCAGGTGT GGGAACGGTT AATTAATCCC CAAACCTTTA TTCCGCAAAA TATCCAAAGA CTTACCGGCA TCTCTCCACA AATGGTGGAA GGTCAACCAA GCTTTGATCA GGTTGCGAAA GAGTTAAAAC AAGAGCTTGA GGGAAAAATA TTCGTTGCTC ACAATGCTCG ATTTGATTAC GGGTTTATCA AGGCCTCTTT TAAAAGGGTC GGCATCGATT TCAAGCCGAA AGTGTTATGT ACGGTAAAGC TTTCTAGATT GCTATTTCCA GAGCAGCCTC GCCATAATCT AGATACCATC ATTAACGCCC ATGGTCTTCA GGTTAGCGCC CGCCATCGTG CGCTGGGCGA TGCAGATTTA CTGCTGCAGT TTTGGCGTGT TTGTGAAGCC AAGTTTGGGG CAGAAAAGCT CAATGAGGTG ATCAATCAAC TGATTGGTAA TCCTAGTCTA CCGCCGAATA TAGATAGAGA CTTAATAGAC TCCATCCCAG ATACTCCTGG TTGTTATATC TTTTACGGCG ATAACAAGAC GCCACTCTAT ATCGGCAAGA GTATTTCTTT GCGTAATAGG GTCATGGGGC ATTTTCAAGG CGCATTAACA CAGCGTAAAG AAATGAAGCT CTCTCTGCAA ATTCGAGATA TTGATTGGAT CGAAACCAGT GGCGAGCTTG GTGCCCTCAT TCTTGAGTCT AGGTTGATTA AAGAACGTAT GCCTAGTATG AACATTAAGC TACGAAGGTC TAAAGATCTT TGTGGTTGGA GCTTAGTTGA AGATGAGTCG GGAGTTCTTT TGCCGCAACT AGTGACCCAC CATCAACTAG CTCCCGGTTT GCAAGAGAAT TTATATGGCT TGTTTTATAG CAAACGAGAG GCGCACTCTT ATTTAAAGGC AATAGCTAAA AAGCATCATC TTTGCGAGGC ATTGCTTGGC CTAGAGAAGA GGGTCGAGGG TAAATCATGC TTTGGTTATC AGGTAAAGCA ATGTGGTGGT GCGTGTCTTA ACCTTACCCC AATTACTTTG CATAATTTGC AATTAAAGAC GGTATTAGAG CTCTTTAAAA TACAGGTATG GCCTTATTCT GGACCGATCG CAATTAAAGA GGGTGGCGAG ATGATTGTGA TTGATAAATG GTGTTATCTA GGTACCGCCA TTAATCAAGA TGAGCTGTAT GAGCTGGCTG AATCTGGTGA TGCTGAGTTT GATCTGGATA TTTACAAGAT AGTTAAAAAA GCCTTATCAG GCGCCTATAA GCAACAAGTG ATTCATTTCT CAGCTCAATA A
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Protein sequence | MDINEVSYPD LAFVDIETTG SHFDRDRITE IGIKTLANDG IQVWERLINP QTFIPQNIQR LTGISPQMVE GQPSFDQVAK ELKQELEGKI FVAHNARFDY GFIKASFKRV GIDFKPKVLC TVKLSRLLFP EQPRHNLDTI INAHGLQVSA RHRALGDADL LLQFWRVCEA KFGAEKLNEV INQLIGNPSL PPNIDRDLID SIPDTPGCYI FYGDNKTPLY IGKSISLRNR VMGHFQGALT QRKEMKLSLQ IRDIDWIETS GELGALILES RLIKERMPSM NIKLRRSKDL CGWSLVEDES GVLLPQLVTH HQLAPGLQEN LYGLFYSKRE AHSYLKAIAK KHHLCEALLG LEKRVEGKSC FGYQVKQCGG ACLNLTPITL HNLQLKTVLE LFKIQVWPYS GPIAIKEGGE MIVIDKWCYL GTAINQDELY ELAESGDAEF DLDIYKIVKK ALSGAYKQQV IHFSAQ
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