| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1635 |
|---|
| Symbol | |
|---|
| ID | 5052810 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | - |
|---|
| Start bp | 1701823 |
|---|
| End bp | 1703124 |
|---|
| Gene Length | 1302 bp |
|---|
| Protein Length | 433 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640471808 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001156413 |
|---|
| Protein GI | 145589816 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2271] Sugar phosphate permease |
|---|
| TIGRFAM ID | [TIGR00893] d-galactonate transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00000373492 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGCTA CAAGCATGGG CACCCCGAGT GCTTTTGAGG ATTTAACTTA TAAGAAAGTC
GCATGGCGCA TCATGCCGCT GCTGATGATC TGTTACATCG TTGCTTACTT AGATCGAGTC
AACGTGGGCT TTGCAAAATT ACAAATGCTG ACTGACTTAG GGTTTAGCGA AGCTGTATAT
GGCTTCGGTG CTGGCGTATT CTTCTTCGGC TACTTTATCT TTGAAGTTCC CAGTAACATC
ATCTTGCATA GAGTGGGCGC ACGAGTGTGG ATTGCTCGAA TCATGGTTAC CTGGGCGGCA
ATTTCAGGTG CTTGTATGTT TGTAAGTACT CCCACCAGCT TTTATGTAAT GCGTTTTTTA
TTGGGCTTAG CTGAAGCTGG ATTTTTCCCG GGCATCATTT TGTATCTCAC ATATTGGTTT
CCATCGGCAC GCCGTTCAAA GATTGTTTCA ATCTTCATGG CTGCTATTCC GTTAGCAGGT
TTGATTGGCG GACCCTTATC TGGTTGGATT ATGGAGTCTG TAGCTGGTGT TAACGGCCTT
ACAGGTTGGC AATGGATGTT TGTGCTTGAA GCCATTCCAG CAGTCATTTT GGCTGTAGTA
GTTTTCTGCT ATTTAGATGA TGGCATTAAA CATGCTAAAT GGTTGAATAA CGAAGAGAAG
GCCATGCTTG CGGCCAATAT TGTGGCTGAT CAACGTGAAA AAGTAGATCA CGGCTCCTTT
GGTGCAATCC TTAAAGATGG CCGCCTCTGG CTTGGTATCG TGGTGTATTT CTGTATCGTG
ATGGGTCAGT ATGGATTAAC TTTCTTCCTC CCAACTTTGA TCAAAACCGC AGGAATTAAA
GGCGTCTTAA ATATTGGTTT GTTTACTGCA ATCCCATACG GAGCGGCAGT GATCTCCATG
ATCTTCTTTG GTCGCAGATC CGATAAAACC CGTGAACGCC GCTGGCATTT AGTTGTTCCT
ATGTATATGG GCGTGATCGG TCTTACTGGT AGTGCGCTTG CGGGCACAAC AAATACCGAG
ATTGCAGTTG CCTTCTTAAC TTTGGCAGCA GCTGGAGTGC TCTCTGCTAC TCCATTGTTC
TGGGCATTGC CTACCTCTTT CTTGGCCGGT GCTTCAGCTG CTGCAGGTAT TGCCGCAATT
AATTCTGTTG GAAATCTCTC GGGCTTCGCA GCACCATTCT TAATTGGTGC TATTAAGGAT
GCGACAGGCT CTTCCAATAT CGGTCTTTAC GTAATTTCTG GCGTGCTGGT AATTGGGTCA
TTTGCAGTAT TGAAATTCCC GGCGAAGTTA GTTAATAAAT AA
|
|---|
| Protein sequence | MTATSMGTPS AFEDLTYKKV AWRIMPLLMI CYIVAYLDRV NVGFAKLQML TDLGFSEAVY
GFGAGVFFFG YFIFEVPSNI ILHRVGARVW IARIMVTWAA ISGACMFVST PTSFYVMRFL
LGLAEAGFFP GIILYLTYWF PSARRSKIVS IFMAAIPLAG LIGGPLSGWI MESVAGVNGL
TGWQWMFVLE AIPAVILAVV VFCYLDDGIK HAKWLNNEEK AMLAANIVAD QREKVDHGSF
GAILKDGRLW LGIVVYFCIV MGQYGLTFFL PTLIKTAGIK GVLNIGLFTA IPYGAAVISM
IFFGRRSDKT RERRWHLVVP MYMGVIGLTG SALAGTTNTE IAVAFLTLAA AGVLSATPLF
WALPTSFLAG ASAAAGIAAI NSVGNLSGFA APFLIGAIKD ATGSSNIGLY VISGVLVIGS
FAVLKFPAKL VNK
|
|---|
| |