| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1570 |
|---|
| Symbol | |
|---|
| ID | 5053033 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | - |
|---|
| Start bp | 1642109 |
|---|
| End bp | 1643725 |
|---|
| Gene Length | 1617 bp |
|---|
| Protein Length | 538 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640471743 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001156348 |
|---|
| Protein GI | 145589751 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3008] Paraquat-inducible protein B |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGACA CAAATCAAGG GCCTGAGCTT CCTAATTTGC CTTCTGCTAT TGCGCACGGT
AGCAGACGTT GGGCGCCTCA AATTATTTGG ATTATTCCAA TTATTGCTGT AGTAGTGGGT
CTTAGTCTCA TGTACAAGGC TGTGGTTGAT CATGGCCCCA CCATTACTGT TGCATTTAAG
ACGGGTGACG GCATTACCGC CGGTAAAACC TTCGTGAAAT TCAAAGATGT CAATATTGGA
TTAGTGAAGA CTGTGGAATT GTCAGAAGAC CATCAACAAG TCATTGCAAA GATTCAACTG
GATCAAGGTG CGGCTGATTT TGCCAAAGAA GATACGCGGT TCTGGATTGT TCGTCCACGT
ATTAGCGCTA ATGGTGTTTC GGGATTAAGT ACTTTATTAG ATGGACCATT TATTGCGGCT
GATTTAGGGA AGTCAGAGGC TACTCGTGAG CATTTCGTCG CTCTTGAGGT GCCCCCGATT
CTCACAGGAG ATAGCCCAGG TAGAGAGTTT ATCTTGCGAG CGCCTACCTT AGGATCCCAT
AATGTTGGCA CGCCAGTATA TTTCCGACGC ATCTCCGTTG GTCAGGTGAT TGCTAATGAT
TTGGATAAAG ATGGCAAGAG TGTCTCTATC AAAATCTTTA TTAATGCGCC CTATGATCAA
TACGTTATCA ACAACACTCG CTTTTGGAAT GCTAGTGGCA TTGATGTCAC AGTTAATGCA
TCCGGTGTGC AATTACAAAC CGAGTCTTTG ATTGCAGTTA TTGCTGGTGG CATAGCATTT
GAGGCCCCGC AACGCCACAC AGATCCTCAG AATCTTATTG CTGGAGATGA CAAGCAGTCT
GATTCCTCTG GGCTGCCCAA GGAGGGCAAT CTTTTATCTG ATCGCGCTAA GGCAGATACT
GTATTTACCT TATTCGATAC TCGCCTTATC GCTATGAAGC AGCCTGATCT GCGCTCTCAA
CGTTTTGTCA TTAACTTTAA GAGTTCAGTT CGTGGCCTGT CTGTAGGAGC CCCAGTTGAG
TTCCGGGGTA TGAACTTCGG TGAGGTAGTA AATATCGAAA CTGCAATGGA TCCAAAAACT
CTTGAAATCA TTCAGCCGGT AGAAATCTTC CTTTACCCTG ATCGCTTGCA AGTTCGCTCT
ATTAAAACTG GCAAGATATT ACCACCCCCA ACTAATGAAA TAGAGCGCTT ACAAGCCTTA
ATCAAAAAAG GAATGCGCGC ACAATTGCTT ACGGGTAGTT TTTTAACGGG TCAGAAATAT
ATTGGTATCG ATATTTTCCC TAATGCGCCT AAGTACACTT TAGATTTATC TCGCAACCCA
CTGGAATTAC CAGCTATACC AAATGAGCTT GATGATGTAG AAAAGTCGCT GACTAGCGTG
ATTAAAAATA CAGATAAGCT AGTCAAAAAA CTAGACAATC AAATCATTCC ACAGTTCGAT
AAGACGTTGA AGAATGTTAA TACGATGACA GATGGAGATT CTCCGCTACT AATCGATATG
CGTGATTCCT TGCGTGAAAT CACTAAGGCT GCAAATTCTG TAAAAACTTT GACGGATATG
CTTGATCAAC AGCCTCAGTC AATAATATAT GGCAAGCCAA CACAGGAGTC TAAGTAA
|
|---|
| Protein sequence | MSDTNQGPEL PNLPSAIAHG SRRWAPQIIW IIPIIAVVVG LSLMYKAVVD HGPTITVAFK
TGDGITAGKT FVKFKDVNIG LVKTVELSED HQQVIAKIQL DQGAADFAKE DTRFWIVRPR
ISANGVSGLS TLLDGPFIAA DLGKSEATRE HFVALEVPPI LTGDSPGREF ILRAPTLGSH
NVGTPVYFRR ISVGQVIAND LDKDGKSVSI KIFINAPYDQ YVINNTRFWN ASGIDVTVNA
SGVQLQTESL IAVIAGGIAF EAPQRHTDPQ NLIAGDDKQS DSSGLPKEGN LLSDRAKADT
VFTLFDTRLI AMKQPDLRSQ RFVINFKSSV RGLSVGAPVE FRGMNFGEVV NIETAMDPKT
LEIIQPVEIF LYPDRLQVRS IKTGKILPPP TNEIERLQAL IKKGMRAQLL TGSFLTGQKY
IGIDIFPNAP KYTLDLSRNP LELPAIPNEL DDVEKSLTSV IKNTDKLVKK LDNQIIPQFD
KTLKNVNTMT DGDSPLLIDM RDSLREITKA ANSVKTLTDM LDQQPQSIIY GKPTQESK
|
|---|
| |