| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1549 |
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| Symbol | |
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| ID | 5052624 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 1618445 |
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| End bp | 1619623 |
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| Gene Length | 1179 bp |
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| Protein Length | 392 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640471722 |
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| Product | extracellular ligand-binding receptor |
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| Protein accession | YP_001156327 |
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| Protein GI | 145589730 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.000137786 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGATTC GTCATCACAT TTATGTAGCA GCAATTGCTG CAATGCTTAC AACAGGGGCT
TATGCTGAAG ACATTATTCT TGGAGTGCAA GGACCCTATA CAGGAGGCTC ATCTTCAATG
GGCGTCAGTA ATCGTGCCGG CATTCATATT GCAGTGAATG AAATCAATGC TGCAGGTGGA
ATAATCGGCA AGAAAATTGT CCTAGTTGAA AGGGATGATG AGGCGAAGAA TGAGCGTGGC
GTTCAAATTG CACAAGAATT TGTGAATAAT GCAAAAGTTG TAGGGGTATT AGGGTTTGTT
AATACCGGCG TGGTTTTAGC CTCTTCTCGC TTTTATCAGG ATGCAAAAAT TCCTGTAATA
GGAATGCCAT CAGGATCAGT TGTAACCCAA CAATTTCCCA ATGCTCCTGA GAATTATATT
TTCCGTATTG CTGCGAGAGA CAGCCTCCAA GCGCCAATGA TCGCAAAGGA AGCCGTTGAA
AAGCGAGGCT TCAAAAAGGT TGCCATTCTG GCTGACTCTA CCAATTACGG CCAGTTAGGT
CGTGAAGATA TGGAAAAAGC ATTAAAGGCA TATGGCGTCA CTCCAGTGGC AGTTGAGAAG
TTCAATATTG GTGATGTGGA TATGACCTCT CAATTGCTCT CTGCAAAGAG TGCTGGTGCA
GAAGCCATTC TCACTTATGG AATTGGTCCT GAGTTAGCTC AGATTGCTAA TGGTATGGCG
AAATTGGGTT GGAAAAAACC CATGATTGGT AGCTGGACTT TGTCAATGTC TAGCTTTATC
GATACAGCTG GTAAAAACGG TGACGGTGCG ATCATGCCGC AGACTTTTAT TCAGATTGGC
AACACGCCTA AACGTAAAGC CTTTATTGAT GCTTACTTAA AAGATTACAA GCCTAAAAAC
GGGTTAATGC CTTCCGCAGT TTCTGCTGCA CAAGGTTACG ACTCCGTATA TATCTTGGCG
GCAGCTATCA AACAAGCAAA TAGCACCGAT GGACCAAAAG TATTGGCTGC CTTACAAAAC
CTTAATGAGC CAGTTCCTGG CGTGATCACT ACTTACGTGA AACCTTACAG CGCAACTGAC
CATGAGGCAA TTGAAGCTAA AGATATTGTG ATGGGTGTTA TTGAAAATGG TCGCGTTCAA
TACCTCAATG CAGAGGATGC CAAAACTAAA AAGATGTAA
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| Protein sequence | MKIRHHIYVA AIAAMLTTGA YAEDIILGVQ GPYTGGSSSM GVSNRAGIHI AVNEINAAGG
IIGKKIVLVE RDDEAKNERG VQIAQEFVNN AKVVGVLGFV NTGVVLASSR FYQDAKIPVI
GMPSGSVVTQ QFPNAPENYI FRIAARDSLQ APMIAKEAVE KRGFKKVAIL ADSTNYGQLG
REDMEKALKA YGVTPVAVEK FNIGDVDMTS QLLSAKSAGA EAILTYGIGP ELAQIANGMA
KLGWKKPMIG SWTLSMSSFI DTAGKNGDGA IMPQTFIQIG NTPKRKAFID AYLKDYKPKN
GLMPSAVSAA QGYDSVYILA AAIKQANSTD GPKVLAALQN LNEPVPGVIT TYVKPYSATD
HEAIEAKDIV MGVIENGRVQ YLNAEDAKTK KM
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