Gene Pnuc_1539 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_1539 
Symbol 
ID5053594 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand- 
Start bp1608294 
End bp1609307 
Gene Length1014 bp 
Protein Length337 aa 
Translation table11 
GC content43% 
IMG OID640471712 
ProductTRAP dicarboxylate transporter, DctP subunit 
Protein accessionYP_001156317 
Protein GI145589720 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component 
TIGRFAM ID[TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family
[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.268114 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACATACA CAAGACGTGA CTTTATGAAG CATGCGGGTA TTGCAGCATT ACCTTTGGTA 
GCTGGCAACG CGTTTGCACA AACTGCAGAG TTCAATATGA AATTTGGTAG TAATTTACCT 
GCTACCCATC CATTGAATAT TCATGCATAT AAGATGGCCT CAAAAATTAA AGTGGAAACA 
AAGGGTCGCG TCGATATTCA AGTTTTTCCT TACAACCAAT TGGGTAACGA TACCGATATG 
TTGTCTCAGT TGCGTTCAGG CGCTTTAGAC TTCATGACTT TATCTCCATT GATCTTGGGT 
TCACTTGTGC CGCAAGCTCA GATCAACGGT GTAGGCTTTG CCTTCAAAGA TTACAAACAA 
GTATGGGCCG CAATGGATGG TGAATTAGGT GCTTATGTTC GCCGTCAAAT CGCCAACACA 
GGAACCATTT TTGCTTTCGA TAAGATTTGG GATAACGGTT ATCGTGAAGT GACTAATAGC 
GTTCGCCCAA TCAACAAGCC AGATGATTTA AAAGGTATTA AGTTACGTAC GCCTCCTGGC 
CCGATGTGGG TTTCTTTATT TAAGGCCTTG GGTGCAGCTC CAACCCCATT GAATTTTGCA 
GAGGTGTATT CAGCACTTCA GTCAAAAGTG GTAGATGGAC AAGAGAATCC TCTGGCGATT 
ATTTATACCG CCAAACTTTA TGAAGTTCAA AAATATTGCT CTATGACCAA TCATATGTGG 
GATGGCTATT GGTTTATGGG TAATAAGAAG TTATTTGAAC AATTGCCGCC AGATCTACAA 
GTAATCGTTA CCCGTAACGT GGCGGAGTCA GCGGTCCTGC AGCGTGCCGA TGTTCGTAAG 
ATGAATGATG GCTTGCAATC TGAATTGAAG GCTAAGGGCA TGGCGGTGAA CGATACCAAT 
CCAGACCCTT TCCGTGAAAA ACTTCGTCAA GCTGGTTTTT ATTCCGAATG GAAGGCTAAA 
TTTGGCGATG AGGCATGGTC TCTACTTGAA AAATATGTAG GCAAGTTAGC GTGA
 
Protein sequence
MTYTRRDFMK HAGIAALPLV AGNAFAQTAE FNMKFGSNLP ATHPLNIHAY KMASKIKVET 
KGRVDIQVFP YNQLGNDTDM LSQLRSGALD FMTLSPLILG SLVPQAQING VGFAFKDYKQ 
VWAAMDGELG AYVRRQIANT GTIFAFDKIW DNGYREVTNS VRPINKPDDL KGIKLRTPPG 
PMWVSLFKAL GAAPTPLNFA EVYSALQSKV VDGQENPLAI IYTAKLYEVQ KYCSMTNHMW 
DGYWFMGNKK LFEQLPPDLQ VIVTRNVAES AVLQRADVRK MNDGLQSELK AKGMAVNDTN 
PDPFREKLRQ AGFYSEWKAK FGDEAWSLLE KYVGKLA