| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1538 |
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| Symbol | |
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| ID | 5053600 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 1606426 |
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| End bp | 1608297 |
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| Gene Length | 1872 bp |
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| Protein Length | 623 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640471711 |
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| Product | TRAP C4-dicarboxylate transport system permease DctM subunit |
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| Protein accession | YP_001156316 |
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| Protein GI | 145589719 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component
[COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0479957 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGTCTGC CGTCCTTAGA AAATGAACCA GTACCTACTG GTTCAATAGC CAAGGGCGCT
GTCTGGTTGG AAACCATTGT TGCTACCCTC GTTCAATGGG TAGCAGCAGG TTTGGTCTTA
GCTTGTATTG GCATTTTGTT TTCCGGGGTG GTGGGGAGGT ATGTATTTAA CTCCCCGCTC
ATTTGGTCAG ATGAGCTTGC TTCCATTTTA TTCTTATGGC TAGCGATGAT TGGTTCGGTC
ATTGCTTTAA AGCGTGGTGA GCATATGCGT ATGACGGCTT GCATCAGCAA GCTCACTCCA
CATAAGCGAA TGTATTTCGA GTCATTCGGG ATTTTGGCCT GCTTCTTTTA TCTGGCCATC
ATTCTTCGTC CTGCATATCA TTTTGCTCTA GATGAATTAA TTGTCACTAC GCCGTCTTTA
GAGATCTCCA ATCTTTGGCG CGCTGCAGCC ATCCCTTGTG GCGTGATCTT GATGATGTTC
TTTTGTCTCT TCCGCTTAGT CAGGATTGGT AGCGTAAAAG TGATTGCAGC GAGTACTCTG
TTGATACTGG CAGGCTTCGC TATTTTTTAC TATTGTTCTC CCTGGTTTGC AGGGCTTGGA
AAATATAATT TACTGATATT TTTTGTTGGT GTCGCTGGCA TCAGTATTTT GGCCGGAGTG
CCAATTGCCT TTGCCTTTGG CTTGGGGACG GTTGCGTATT TGGGATTGAG TACGCATATG
CCTCTATCAG TAGTGATTGG GCGTATGGAT GAAGCAATGT CTCATATGGT CTTGCTGGCA
GTACCTTTGT TCGTCTTCTT GGGTCTTCTG ATGGAGATGA CCGGTATGGC TAGGGCAATG
ATTGCTTTTC TAGCTTCAAT GCTTGGACAC GTTCGAGGCG GCTTATCGTA TGTCTTGGTT
GGTGCAATGT ATTTGGTATC CGGCATCTCT GGGTCTAAGG CAGCTGACAT GGCAGCAATT
GCTCCAGCAC TCTTTCCTGA AATGAAGAAG ACAACTCCAC CGGGTGAGTT GGTTGCTTTA
TTGGCAGCAA CTGGCGCGCA AACAGAAACA ATTCCACCAA GCTTAGTGTT GATTACGATT
GGCTCTGTAA CTGGTGTATC GATTGCAGCG TTATTTACAG GTGGTATGTT GCCGGCCTTG
ATCTTGGGGT TAATCTTATG TGCATTAGTT TGGAGGCGTA ATCGTCATGT CCAGATTACT
GTTACCAATC GTCCTAAAGC TAGTGAAATA TTCAAGCTAT TTTTCATTGC CTTTCCAGCG
CTGGCTCTGC CGTTCGTCAT TCGTGCTGCT GTAGTAGAAG GAGTGGCTAC AGCTACCGAG
GTATCAACAA TTGGTATTGT TTACGGCTTG GTATGTGGCG TATTGGTTTA TAGGCAATTT
GATCTTAAGC GGATTGTGCC TATGTTGATT GATACAGCAT CTTTATCGGG CGCGATTCTA
TTAATTATTG GCGCTGCTAC TGGGATGGCC TGGGGTCTAA CGCAATCCGG TTTCTCTCAG
GTGGTTGCGC AAATCATGAC TGACCTTAAT GGCGGCCCCC ATTTATTTTT ATTCATCTCC
ATTATTGTGT TTGTGATTTT GGGATCCGTT CTTGAAGGTA TTCCGGCTAT TGTGTTATTT
GGACCATTGT TGTTCCCTGT TGCTCGTCAA TTAGGTATTA ATGAGGTCCA TTATTCAATG
GTCGTGATTT TGGCTATGGG TATTGGTTTA TTTGCCCCTC CTTTGGGGGT TGGCTATTAC
GCTGCTTGTG CCATTGGCAA GGTTAACCCA GATGAGGGCG TTAAACCAAT CATGGGTTAT
TTAGTTGCAC TAGTGATCGG CACTTTGATC GTGGCATTTG TCCCATGGAT TTCTACTGGA
TTTTTGTCAT AA
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| Protein sequence | MSLPSLENEP VPTGSIAKGA VWLETIVATL VQWVAAGLVL ACIGILFSGV VGRYVFNSPL
IWSDELASIL FLWLAMIGSV IALKRGEHMR MTACISKLTP HKRMYFESFG ILACFFYLAI
ILRPAYHFAL DELIVTTPSL EISNLWRAAA IPCGVILMMF FCLFRLVRIG SVKVIAASTL
LILAGFAIFY YCSPWFAGLG KYNLLIFFVG VAGISILAGV PIAFAFGLGT VAYLGLSTHM
PLSVVIGRMD EAMSHMVLLA VPLFVFLGLL MEMTGMARAM IAFLASMLGH VRGGLSYVLV
GAMYLVSGIS GSKAADMAAI APALFPEMKK TTPPGELVAL LAATGAQTET IPPSLVLITI
GSVTGVSIAA LFTGGMLPAL ILGLILCALV WRRNRHVQIT VTNRPKASEI FKLFFIAFPA
LALPFVIRAA VVEGVATATE VSTIGIVYGL VCGVLVYRQF DLKRIVPMLI DTASLSGAIL
LIIGAATGMA WGLTQSGFSQ VVAQIMTDLN GGPHLFLFIS IIVFVILGSV LEGIPAIVLF
GPLLFPVARQ LGINEVHYSM VVILAMGIGL FAPPLGVGYY AACAIGKVNP DEGVKPIMGY
LVALVIGTLI VAFVPWISTG FLS
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