Gene Pnuc_1461 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_1461 
Symbol 
ID5053778 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand
Start bp1536388 
End bp1537752 
Gene Length1365 bp 
Protein Length454 aa 
Translation table11 
GC content47% 
IMG OID640471633 
ProductDNA repair protein RadA 
Protein accessionYP_001156239 
Protein GI145589642 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG1066] Predicted ATP-dependent serine protease 
TIGRFAM ID[TIGR00416] DNA repair protein RadA 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.421655 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGGCTAAAG TCAAAACGAT TTATATCTGC CAGTCCTGTG GTGGCACCTC TGCTAAATGG 
CAAGGTCAGT GTCCCTCATG CCAAGCTTGG AACACTCTAG AAGAGGGTTT GCCAGAGACC
ACTTCGAATG CGCGTTTTCA GTGTTTGGCA CAATCACTGC CAAGGCAAAA ATTGTCGGCC
ATTACTGCGG AAGATTTGCC GAGATTTAGT ACTGGAGTAG AAGAGTTTGA CCGCGTCTTA
GGTGGCGGAT TGGTGCCCGG TGGAGTAGTT CTTTTGGGTG GTGATCCCGG CATTGGTAAA
TCTACTTTAC TGTTGCAGGC TTTAGCTGAG ATGAGTTCTG CTGGTATGAA TGTTCTCTAC
AGCAGCGGTG AAGAATCTGC GGCTCAAATT GCACTTCGTG CAAAACGGAT TGCCTTGGAT
GCACCTCAAT TAGAAGTGTT GGCGGAAATT CAGTTAGAAA AACTCATTTC GATTATGGAT
ACCGTCAAGC CACAAGTGTT AGTGGTCGAC TCTATTCAAA CCTTGTATTC AGAAGTATTA
AGTTCTGCAC CGGGATCCGT TGCTCAGGTC AGAGAGTGCG CAGCGCAATT AACTCGAGCA
GCTAAATCGA GTGGAATTTG TGTATTGATG GTTGGACATG TCACTAAAGA TGGACATTTG
GCGGGCCCTC GTGTCTTAGA GCACATTGTT GATACCGTCC TTTATTTTGA GGGCGATACT
CACTCTTCTT TCCGCCTAGT TCGCTCTATC AAGAATCGTT TTGGCGCAGT AAATGAGTTG
GGCGTTTTCG CGATGACCGA AAAAGGTTTG CGCGGAGTCA CCAATCCTTC GGCTATATTC
CTGTCACAGC ACGAACAGAT GGTGCCGGGC GCTTGTGTGT TGGTTACGCA AGAGGGTAGT
AGACCGCTTT TAGTCGAAAT TCAGGCTTTA GTAGATACAG CACACGTTCC AAACCCGCGG
CGTTTAGCGG TTGGTCTAGA GCAAGCGCGT TTGGCAATGT TGTTAGCAGT TTTACATCGC
CATGCTGGCA TCGCCTGTTT TGATCAAGAT GTTTTCTTAA ATGCGGTAGG TGGAGTCAAA
ATTTCTGAGC CCGCCGCTGA CTTAGCGGTG CTGCTTGCTA TTCAGTCATC TATTCGTAAT
CGTGCTTTAC CTAAAGAGTT GATTGTTTTT GGTGAGGTAG GTTTGGCTGG AGAGATCCGT
CCTTGCCCGC GCGGGCAAGA GCGCTTAAAA GAGGCTGCTA AGTTGGGTTT TACCGTTGCC
ATTATTCCAA AAGCAAACAT GCCCAAGACC AAAATACCTG GATTGAAAGT GATTCCGGTA
GAGCGAATTG ATCAGGCTAT CGCAGCAGCT GCCGAACTTA ATTAA
 
Protein sequence
MAKVKTIYIC QSCGGTSAKW QGQCPSCQAW NTLEEGLPET TSNARFQCLA QSLPRQKLSA 
ITAEDLPRFS TGVEEFDRVL GGGLVPGGVV LLGGDPGIGK STLLLQALAE MSSAGMNVLY
SSGEESAAQI ALRAKRIALD APQLEVLAEI QLEKLISIMD TVKPQVLVVD SIQTLYSEVL
SSAPGSVAQV RECAAQLTRA AKSSGICVLM VGHVTKDGHL AGPRVLEHIV DTVLYFEGDT
HSSFRLVRSI KNRFGAVNEL GVFAMTEKGL RGVTNPSAIF LSQHEQMVPG ACVLVTQEGS
RPLLVEIQAL VDTAHVPNPR RLAVGLEQAR LAMLLAVLHR HAGIACFDQD VFLNAVGGVK
ISEPAADLAV LLAIQSSIRN RALPKELIVF GEVGLAGEIR PCPRGQERLK EAAKLGFTVA
IIPKANMPKT KIPGLKVIPV ERIDQAIAAA AELN