| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1455 |
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| Symbol | |
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| ID | 5052788 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 1526654 |
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| End bp | 1528669 |
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| Gene Length | 2016 bp |
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| Protein Length | 671 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640471627 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_001156233 |
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| Protein GI | 145589636 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTCGTCTA ATAGTCCGAC AAATTTAGCG GATCGCTATG CATTTTTGCA AGCCGAGCTC
GCTCGCTTAG AGCATGCCTA CTATGTTCTT GATAATCCCT TATTGCCGGA TATCGAATAC
GACCGTCTTT ATCGCGAATT ATTGGATATT GAGGCTGCAC ACCCACAATG GGTTACCTCA
GAATCTTTGT CTCAGAGGGT TGGTGGGACA GCTCTAAAAG AATTCGATTC GGTGACTCAT
GCGGTCCCTA TGCTGTCTTT AAATAACGCA TTTGAGGATT CAGAGTTGAT TGCGTTTGAT
AGACGCTGCC GCGAAGCCTT GCATGTTGAG CATGTTGCTT ATGCTGGTGA ATTAAAGTTT
GATGGGTTGG CTATTTCTCT TCGTTATGAG AACGGCACAC TAGTCACAGC GGCCACTCGC
GGCGATGGAG CAAGCGGAGA AGATGTCACT GCTAATATCA AAACCATCCG CGCCATTCCC
TTGAAATTGA CGGGTAAGAA CATTCCCGAG ATATTGGAGG TTCGCGGCGA AGTTTTTATG
TACCTTAAAG ATTTTGAGAA AATGAATCGA CAGGCTGCAG AGCTAGGCGA GAAAGAATTT
GCTAATCCCC GCAATGCGGC AGCAGGTAGT TTGCGTCAAT TAGACTCTAA AATTACTGCT
AAGCGGCCGC TGTCATTTTT TGCTTATGGC TTAGGTGCTT TAGAGCCTCA GTCTTGGTTG
CCCAAAACTC ACGAAGAGTT GCTCAATGCT TATGTGGAAT TAGGCTTGCC AGTATGTTCT
GAGCGCAGAG TGCTGCACTC AGTGGAAGAG ATTCTTGCCT TCTATAACGA GATTGGTGCC
AAACGCGATT CTTTGCCCTA TGACATTGAT GGGGTTGTAT ACAAGGTCAA CTCATTTGCC
GAGCAAGCTA AGCTCGGTTT TGTATCCAGG GCCCCACGTT TTGCATTAGC GCATAAATAC
CCAGCTCAAG AGGCATTAAC GACTGTGCTG GGGATAGACG TTCAGGTTGG ACGAACTGGT
GCAATTACTC CAGTCGCTAG ACTTGCTCCA GTCGAGGTTG GTGGGGTAAC GGTAACTAAT
GCAACGCTTC ACAACGAAGA TGAGGTGAAG CGTAAGGATG TTCGTATTGG AGATACAGTA
TCAGTGCGTC GTGCTGGCGA TGTAATTCCT GAGGTGGTGT CTGTAATAAA AGAGCGTCGT
CCATCTGATG CTAAAGAATT TGTTATGCCA AGCCGTTGCC CTGTATGCGA TTCTCATATT
GAGCGATTAG CTGATGAGGC TGTCGCGCGT TGTAGTGGCG GCTTATTCTG TGGTGCGCAA
CGTAAACAAG CACTCATTCA TTTTGCACAT AGAAGGGCTT TAGACATTGA GGGTCTTGGT
GAAAAGATTG TTGATCAGCT GGTAGATCAG AATCTGGTGA GAACGCCTGC CGATCTATAT
AGACTAGGCT TTACTGCCTT GGCTAATTTA GAGCGAATGG GCGAGAAGTC TGCTGATAAT
CTGATTCAGG CTATTAACCA ATCTAGAAAC ACTACCTTAG CGAGATTTAT TTTTGCCCTG
GGCATTCGTC ATGTGGGTGA GACAACCGCC AAAGATCTAG CCAATCATTA CCAATCCATG
CATGCCTTAA TGGATGCAAG TGTGGAAGAG TTATTGACAG TTAAAGATGT TGGCCCAGTC
GTTGCAGATT CCATTACAAG CTTTATGCAA GAAGCTCATA ATCGAGAGGT AATTGAACAA
CTCCTAGCTT CCGGAATGCA GCTTTCTGTA GAAGAAAAAA TCATCAGCGC AGCAGTTTTT
GGTAAAACAT TTGTTCTGAC TGGCACCTTC CCAACGATGA CGCGTGATGA AGCTAAGGAT
CTTTTGGAAA AAGCAGGAGC CAAAGTGGCC GGCTCGGTTT CTAAGAAAAC CGACTATGTT
GTTGCTGGAA CAGATGCCGG TAGCAAACTT GCTAAAGCAG AAGAGTTAGG TGTCCCAGTA
ATTGACGAAG AGGAAATGCT AAATTTATTA AAGTAA
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| Protein sequence | MSSNSPTNLA DRYAFLQAEL ARLEHAYYVL DNPLLPDIEY DRLYRELLDI EAAHPQWVTS
ESLSQRVGGT ALKEFDSVTH AVPMLSLNNA FEDSELIAFD RRCREALHVE HVAYAGELKF
DGLAISLRYE NGTLVTAATR GDGASGEDVT ANIKTIRAIP LKLTGKNIPE ILEVRGEVFM
YLKDFEKMNR QAAELGEKEF ANPRNAAAGS LRQLDSKITA KRPLSFFAYG LGALEPQSWL
PKTHEELLNA YVELGLPVCS ERRVLHSVEE ILAFYNEIGA KRDSLPYDID GVVYKVNSFA
EQAKLGFVSR APRFALAHKY PAQEALTTVL GIDVQVGRTG AITPVARLAP VEVGGVTVTN
ATLHNEDEVK RKDVRIGDTV SVRRAGDVIP EVVSVIKERR PSDAKEFVMP SRCPVCDSHI
ERLADEAVAR CSGGLFCGAQ RKQALIHFAH RRALDIEGLG EKIVDQLVDQ NLVRTPADLY
RLGFTALANL ERMGEKSADN LIQAINQSRN TTLARFIFAL GIRHVGETTA KDLANHYQSM
HALMDASVEE LLTVKDVGPV VADSITSFMQ EAHNREVIEQ LLASGMQLSV EEKIISAAVF
GKTFVLTGTF PTMTRDEAKD LLEKAGAKVA GSVSKKTDYV VAGTDAGSKL AKAEELGVPV
IDEEEMLNLL K
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