| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1393 |
|---|
| Symbol | |
|---|
| ID | 5052318 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | + |
|---|
| Start bp | 1463597 |
|---|
| End bp | 1464304 |
|---|
| Gene Length | 708 bp |
|---|
| Protein Length | 235 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640471565 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001156171 |
|---|
| Protein GI | 145589574 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTTAATG CGAACGAACA ATTTACTCGA TTTATTGAGC TCAAAGACAT TACGGTTAAG
AGTAATGATC GAACCATTCT CAATATTCCA CATGCCATCA TTCCCACTGA TCGCATCACA
GCATGCATTG GCCCCAATGG AGCTGGTAAG ACCACATTTC TCAAGCTGTT GGATGGGCTG
GTCAAACCAG ATACCGGCAG TATTCACTAC TCCTTCCTGC CCAAAACTGC ACTGGTACTG
CATCACACGC CAATGATTAA GGCATCTACC AGGACGAATA TCAGCATGGC AACCGATGCT
GATCCATCAA TTACTTCCAG CCAAATTGAT CAAGCTATTC ATCAGGTAGG TTTGAGTGCG
TTGGCTTCCA GTCCAGCACA TAAGCTTTCT GCCGGTGAGA GGCAAAAAAT CTGTCTTGCA
CGAGCATTCT TGCTAAAGCC GAACTTAATG TTGCTGGACG AGCCCACTGC GAATTTGGAT
CCTCAGGCTA CGGAACAAGT AGAGCAATTA GTTCGGGATT TTAAAAATTC CAATGTAGAC
GTAGTCTTCT CTTCTCATTT GCTTGCTCAA GTTCAAAGAC TGGCTCAGTA CGTTCTCTTT
ATTGATCAAG GCGAGGTAAA AGAAAAGGGG CCCGTGGGCC CCTTCTTTTC CAATCCACAA
ACATCTGCTG CCAAACGTTA TCTAGCTCAA GAACTACTCA TAGATTAA
|
|---|
| Protein sequence | MVNANEQFTR FIELKDITVK SNDRTILNIP HAIIPTDRIT ACIGPNGAGK TTFLKLLDGL
VKPDTGSIHY SFLPKTALVL HHTPMIKAST RTNISMATDA DPSITSSQID QAIHQVGLSA
LASSPAHKLS AGERQKICLA RAFLLKPNLM LLDEPTANLD PQATEQVEQL VRDFKNSNVD
VVFSSHLLAQ VQRLAQYVLF IDQGEVKEKG PVGPFFSNPQ TSAAKRYLAQ ELLID
|
|---|
| |