Gene Pnuc_1342 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_1342 
Symbol 
ID5052735 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand
Start bp1417880 
End bp1419160 
Gene Length1281 bp 
Protein Length426 aa 
Translation table11 
GC content46% 
IMG OID640471514 
ProductDEAD/DEAH box helicase domain-containing protein 
Protein accessionYP_001156120 
Protein GI145589523 
COG category[J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG0513] Superfamily II DNA and RNA helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTATTTA CTGATCTCGG TTTATCTGAA CCCATTCTTC GCGCCATTGC AGAAGAGGGT 
TACACCAGCC CCACCCCCAT TCAAGCAAAA TCCATTCCTG CAGTACTCAA GGGCGGAGAT
CTCTTAGCTG CAGCACAAAC TGGCACAGGC AAGACTGCTG GCTTTACGCT TCCTATATTG
CAACGCCTAA GCTCTATCAA GGCAAGCTCA GGAAAGCGTG TGTTGCGCGT TCTGATTTTG
ACTCCTACAC GTGAGTTAGC AGCCCAAGTA CAAGAATCCG TCGTTACTTA TGGCAAGTAC
ACCGGCTTAA AGTCAACAGT CATTTTTGGT GGCGTTGGTG CAAATCCCCA AATCAAAGCC
ATTGCAGCAG GTCTTGATAT TTTGGTTGCT ACCCCAGGTC GCTTGCTAGA TCTCATGTCT
CAAAAATGTG TTTCACTGAA CGATATTGAG ATCTTGGTTT TAGATGAAGC GGATCGCATG
CTAGACATGG GCTTCTTGCG CGATATTAAA AAGATATTGG CTGCGTTGCC TAAGCAACGT
CAAAACCTCC TGTTCTCAGC AACCTTCTCT ACTGAAATTA AAGCGCTTGC CGATGGCCTA
TTGAATAAGC CTGAGCTCAT TGAAGTGGCG CGAAGTAATA GTGCTAATGA AGCTATTGCA
CAATTGATTC ATCCAGTCGA TAGAAATCAA AAACATCCTT TGCTGGCTCA TTTGATCAAG
TCCAACGACT GGAAACAAGT TCTTGTATTT ACGCGCACCA AGCATGGAGC CAATAAGCTA
GTTACTCAGT TAGAAAAAGA TGGCATTACG AGCATGGCGA TTCACGGCAA TAAAAGCCAA
ACCGCACGCA CTAAAGCTTT GGCAGATTTC AAGGCAGGAA AGCTCACAGC ATTGGTGGCT
ACCGATATCG CTGCACGCGG AATCGATATC GACCAACTAC CCCATGTGGT GAACTACGAT
TTGCCAAATG TTTCTGAAGA CTATGTGCAT CGTATTGGCC GTACCGGACG CGCTGGCTCA
AATGGTGTTG CAGTATCTCT AGTCTGCGTA GACGAACATC AAATGCTTAG AGATATCGAA
AAACTCATTA AGCAAAAATT ACCGCAAGAA GTTATTGCAG GTTTTGAGCC TGATCCGAAT
GCAATTGCTC AGCCTATTCA GTTGCGTAGC CAACAACATC AACAATCCAG AAGGCCAAAA
GTAGCAGGAT CTGGTGGCGC ACCAGCCAAA AAGGCCCCCG CTAAACGCAG CAGCCCACCT
AAAAGATCAT TTAACCGCTA A
 
Protein sequence
MLFTDLGLSE PILRAIAEEG YTSPTPIQAK SIPAVLKGGD LLAAAQTGTG KTAGFTLPIL 
QRLSSIKASS GKRVLRVLIL TPTRELAAQV QESVVTYGKY TGLKSTVIFG GVGANPQIKA
IAAGLDILVA TPGRLLDLMS QKCVSLNDIE ILVLDEADRM LDMGFLRDIK KILAALPKQR
QNLLFSATFS TEIKALADGL LNKPELIEVA RSNSANEAIA QLIHPVDRNQ KHPLLAHLIK
SNDWKQVLVF TRTKHGANKL VTQLEKDGIT SMAIHGNKSQ TARTKALADF KAGKLTALVA
TDIAARGIDI DQLPHVVNYD LPNVSEDYVH RIGRTGRAGS NGVAVSLVCV DEHQMLRDIE
KLIKQKLPQE VIAGFEPDPN AIAQPIQLRS QQHQQSRRPK VAGSGGAPAK KAPAKRSSPP
KRSFNR