| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1305 |
|---|
| Symbol | |
|---|
| ID | 5053377 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | - |
|---|
| Start bp | 1379079 |
|---|
| End bp | 1382636 |
|---|
| Gene Length | 3558 bp |
|---|
| Protein Length | 1185 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640471477 |
|---|
| Product | UvrD/REP helicase |
|---|
| Protein accession | YP_001156083 |
|---|
| Protein GI | 145589486 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.737945 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCATCAG ACCCAAATCA GGCTATGAGC AAGGTTCTTA GTGAGGTAGA AAAGCAAGCC
TATTCTGAAA GCTTAGCTTG CGATCCTCAT CAGTCAGTGA TTGTTTCTGC ATGCGCAGGC
AGTGGAAAGA CCTGGCTATT GGTGGCACGC ATGGTGCGTC TCTTGCTTGA TGATGTGAAA
CCGCAAGAAA TATTAGCGCT GACATTTACT CGTAAAGCTG CGCAGGAAAT GCGTGATCGT
TTGTATGGTT TGCTTGAACA CTTTTCAAAA ATAGATGATG ACTCCTTAAT GCAGGAGCTA
ATCGCCAGAG GTTTGAATGT TGATCAAGCG CGATCCTATT TGCTGAAAGC CAAAGCACTT
TATGAGGAGG TACTCGCAAA CCCCCAGCCA ATTGTGATTG ACACCTTTCA TGGCTGGTTT
GGTAGATTGC TTGGTGCCGC TCCAGTTTCC CTGGGGATCC AACCAGGCTT TACATTGCGC
GAGGACGCTA AACGTCTGCA GTCAGAGTGT TTAGATGATT GGTGGGGAAA TCTTCCCGCC
GAGCACAAGG GTCATTATGA CGTCCTACTC AAGCACTTAG GTTCACACGA GACCCAAAAA
CTCTTAATGG GAAAAGCAAG TCTCTTTAAG CAAAGAGGTG CTTGGAATTT TTATACAAAA
GATTGCATTC AAAAAGGCAT CAGCCCCGTA GATCGCTTAA CGCAAGTTTT GCATCGCCTC
CATCTTCCCA ATCCATTAAT GGTTTTATGG GACGCCTCCA ATGCTTTAGA GGATTTAAGA
TTCTTGGCTA AATGCTTTGC TAATAGCAGT TCGCAGGACA GTGATCTATT GGAGTATTTA
CTTCCTGCAA TTGATTGCAA AGAGCAAGGC GGAAGCGTCA TGGATGTGGC AAGTACTTTG
CAAACTACAT TCTTAACTAA AGATCTAAAG TACCGCAGTA ATAATGACAA AGCTTTGGGG
GCTCTGCAAA AGTACCTTGA TGCAGAGGGG CTGTCAGATC GTGTAGCCGA GCATATTGCA
ATAAAACAAT CATGGGGCCA TTCCTTTGAA GCCTATTTGT TGTGGCAAGC TGAGCAGGAT
GTATTGGCAA TCAATCAGGC TTGGTTTGCT TTGAATCAAT CCATGATGGC TCACGCCAGC
GCCAAAAAAG AAAATATGCG GGTCCGTGAT TTTGATGATC TGGAGATTGG TGTAAGCACC
TTGATGGCAG ATGCAGCGAA TGCAGCCTAT CTACAAGCCC GTTTAGATGC AAAGTACAAG
CAAATCCTCA TTGATGAGTT TCAGGACACA AATCCATTGC AGTGGCAGAT TTTGCGTGCT
TGGCTAGCAG GCTACAGCGC AGGCGATGAC AAGCCCAAAG TATTTATAGT GGGCGATCCA
AAACAGTCAA TTTATCGTTT CCGCCGCGCT GATCCTAGGT TGTTCGAAAG TGCAAAGCAA
TTTTTGCATG AGGAGTTAGG TGCGGTTTAT ATCGAGCAAG ATAAAACCCG CCGCAATGCC
CCAGAAATTA ACCAAGCTGT GAATCGAATA TTTACAGACG AGCAGATTCC GCCGGAATAT
CCATATTCAA AACAAGAGAC TCTCTGGACT TCACCAGTGC TGGATAGACC CGGTGATGCC
TATGCTGAGC AAGGTGAGGT ATTTCTTCTT CCTTTAATTC CCTATGCTGA GAAATTGGAA
GAAGTGCGTG AAGGAAGCGC ATTTGATAAA GCAATTGCTG ATCCAGGGCA GACTAATGCA
GCCATCCAGC GATATCGAGA GGGACAAGCT CTTGGTCGCC TCATTAACCA TCTTCTCAAA
ACCCGAAAAG TACCGGATCA AGCGGATGGT AAAACAGTCT GGCGTGCTGC GCGAGCAAGT
GATTTCTTGC TGTTGGTTAA GCGACGCCAA TTCTTAACGG AATATGAAAG AGCATTGCGT
GAAGCAGGGC TTGCCTATGA AAGCTCACGC CTAGGCGGCT TATTAAATAC TTTGGAAGTA
GATGATCTGA TTGCCTTATT GACGGTGTTG GTTACTCCCC GTCATGATTT ACCGTTGGCC
CAAGTCTTAC GTAGTCCTAT CTTTAACTTT ACTGAAAAGC AAATGCAAAA GCTTGCTGTG
GCGATGAATG CTGATCAATA TCGCTCATGG TGGGACGCGT TACAAGATAG TCAAGACGCT
CAATTACAAA CCGCTGCTCG CTATTTAAAG CATTGGCATC TTTTAGGTGA GCGTTTGCCG
GTGCATGACT TATTAGATCG CATCTATCAA GAGGGTGATG TACGCATTAA ATACGCCGCC
ATATGTCAGG AGATTGACCG TCCACAGGTG TTGGCTAATT TAGATGCCTT CTTGGAGGTC
GCGCTTGATC AAAACGGCGG TCAATATCCC AGCTTAAGTC GATTTATTCA GGAAATTAAT
GCCAAGCGAC GTGGCGATGA TGATGAAACC CCAGACGAAG GGGATGTTGA CGCTACCGGT
GATGAAAATT TAGTCGAACT TAACGGCGAA AATGACATGT CGGAGGAGGA TCAACAGCAG
CGTGTTCGCA TGATGACGAT ACATGGCGCT AAAGGTTTGG AGTCACCGTT TGTCATATTG
TTAGATGCCA ATAATACCGA CGCCAATGTT GACTATAGTG GTGTCTTGAT GGATTGGGCG
CCGCATGAAC AAAGTCCATC CCACCTGTCT TTATTTACCT CTAAGACTCT AACTAGCCCT
CGACTAGAGT TAATCGAAGC GGAAAAGAGC ATTGGTGAAA ATGAAAACTG GAACTTGCTC
TATGTGGCGA TGACCCGCGC ACGCCAGGGC CTCTGGATTA GTGGAGATGC GCAAAAGCCG
ACGAAAAATA ATCCAGATGG TCTCGATAAA TCCTCCTGGT ATGGCAAAGC GAGTAATGCC
GGTATTCCAA TTGCAGTGGT TCCAGTAGGA ATGGAGCATA AAGAGCCCGC GCACTTAACT
AAAGACGGCG CTCATGAGTC CGCTATAGAA GACTTTGTCT TAAATTGGCT ACCCGCCATT
CAAAATCATG ATCAATTGCT AAGCGATATT GAAGGCGGGC AAACACTTGA GGTGTTTGTC
GGGGGCGACA AACAAGTCGA TGAGCCGGAT CCAGAGATTT TGGAGGAGGG CAATCACTTC
CATCAATTAC TAGAGATGAT GACTGCACAA ACTAGCGCGC CTCTGATGCA AGCTATGCCT
AGCAAACAAG AGATTGTCGA TTGGTTGGGT ATTCATGAAG ATCATGCTGA GCAGTTAATC
AAGCGTGTAA CAGCGGTATT GGAAACGCCT GCATTAAAGA AATATCTGAC TGATGGAGCC
TGGGTGCAGG CCTGGAATGA ATTGGATATA GCCTCTCAAG ATGGCAAGAG CTACCGCATG
GATCGCTTAG TAGAGTTTGA TACCCATTTG GCCATCATTG ATTACAAGTT AACTATTCCA
CCTGAGGGAA GTGAGCAGTA CGAAAAATAC TGTAAACAAC TGGCAAACTA CCAAAAGGTA
TTGGAGCACA TTCGCTCGGA TAAGCCCAGC AAGGCTTTTT TAATCTCCTC GCTTGGTGAG
TTAAAGCAGC TTCTTTGA
|
|---|
| Protein sequence | MPSDPNQAMS KVLSEVEKQA YSESLACDPH QSVIVSACAG SGKTWLLVAR MVRLLLDDVK
PQEILALTFT RKAAQEMRDR LYGLLEHFSK IDDDSLMQEL IARGLNVDQA RSYLLKAKAL
YEEVLANPQP IVIDTFHGWF GRLLGAAPVS LGIQPGFTLR EDAKRLQSEC LDDWWGNLPA
EHKGHYDVLL KHLGSHETQK LLMGKASLFK QRGAWNFYTK DCIQKGISPV DRLTQVLHRL
HLPNPLMVLW DASNALEDLR FLAKCFANSS SQDSDLLEYL LPAIDCKEQG GSVMDVASTL
QTTFLTKDLK YRSNNDKALG ALQKYLDAEG LSDRVAEHIA IKQSWGHSFE AYLLWQAEQD
VLAINQAWFA LNQSMMAHAS AKKENMRVRD FDDLEIGVST LMADAANAAY LQARLDAKYK
QILIDEFQDT NPLQWQILRA WLAGYSAGDD KPKVFIVGDP KQSIYRFRRA DPRLFESAKQ
FLHEELGAVY IEQDKTRRNA PEINQAVNRI FTDEQIPPEY PYSKQETLWT SPVLDRPGDA
YAEQGEVFLL PLIPYAEKLE EVREGSAFDK AIADPGQTNA AIQRYREGQA LGRLINHLLK
TRKVPDQADG KTVWRAARAS DFLLLVKRRQ FLTEYERALR EAGLAYESSR LGGLLNTLEV
DDLIALLTVL VTPRHDLPLA QVLRSPIFNF TEKQMQKLAV AMNADQYRSW WDALQDSQDA
QLQTAARYLK HWHLLGERLP VHDLLDRIYQ EGDVRIKYAA ICQEIDRPQV LANLDAFLEV
ALDQNGGQYP SLSRFIQEIN AKRRGDDDET PDEGDVDATG DENLVELNGE NDMSEEDQQQ
RVRMMTIHGA KGLESPFVIL LDANNTDANV DYSGVLMDWA PHEQSPSHLS LFTSKTLTSP
RLELIEAEKS IGENENWNLL YVAMTRARQG LWISGDAQKP TKNNPDGLDK SSWYGKASNA
GIPIAVVPVG MEHKEPAHLT KDGAHESAIE DFVLNWLPAI QNHDQLLSDI EGGQTLEVFV
GGDKQVDEPD PEILEEGNHF HQLLEMMTAQ TSAPLMQAMP SKQEIVDWLG IHEDHAEQLI
KRVTAVLETP ALKKYLTDGA WVQAWNELDI ASQDGKSYRM DRLVEFDTHL AIIDYKLTIP
PEGSEQYEKY CKQLANYQKV LEHIRSDKPS KAFLISSLGE LKQLL
|
|---|
| |