| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1292 |
|---|
| Symbol | |
|---|
| ID | 5053769 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | - |
|---|
| Start bp | 1363913 |
|---|
| End bp | 1365121 |
|---|
| Gene Length | 1209 bp |
|---|
| Protein Length | 402 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640471464 |
|---|
| Product | radical SAM protein |
|---|
| Protein accession | YP_001156070 |
|---|
| Protein GI | 145589473 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0820] Predicted Fe-S-cluster redox enzyme |
|---|
| TIGRFAM ID | [TIGR00048] radical SAM enzyme, Cfr family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.000206153 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGACCTCCC CGCGCGTAAA TCTCTTAGAT TTTGACGCTG ACCAAATGGC AGCGTATGTC
GCGGGGTTGA ATGAAAAGCC CTTTAGGGCA AAACAACTCA TGCAATGGAT ACATCAACGT
GGTGTATCCG ACATTAATGA CATGAGTGAT TTAGCAAAAA GCTTTCGAGC AACTTTGCTC
GATAAAGTAG AAGTCCTATC TCTCCCCGTA ATTAAAGATG AACATGCTAC AGACGGCACA
CGCAAGTGGT TGCTGGATGT CGGCGCCGGT AATGCGGTTG AATCCGTATT TATTCCCGAG
GATGATCGAG GTACATTGTG CATCTCTTCT CAGGCAGGCT GTGCTGTCAA TTGTCGTTTT
TGCTCGACAG GCCGCCAAGG CTTTTCACGT AATCTCACCT CAGGTGAAAT CATTGGCCAA
CTCTGGTTTG CAGAGCATCT TTTGCGCAAC GATCCCGAGG CTATTCGCAG AATTGAAAAA
TATCCCACCC CAGGCTGGGA GCACACTGGA CGTGTCATTT CCAATGTGGT GATGATGGGT
ATGGGTGAGC CTTTACTGAA CTACGACAAT GTTGTTTCTG CATTGCGTTT AATGCTCGAC
GATAGAGCGT ATGGATTGTC TCGCCGTCGT GTCACAGTAT CTACATCAGG TGTTGTGCCG
ATGATTGATC GTCTAGCGCA AGATTGTCCA GTTGCCTTGG CAGTTTCATT GCATGCGCCT
AACGATGCCT TGCGAGATCA GTTGGTTCCT CTAAATCAAA AATATCCATT GCGTGAATTG
CTTGATGCCT GTGAGCGCTA CTTGCCATTT GCACCAAGAG ATTTCTTGAC CTTTGAATAC
TGCATGCTTG ACGGCGTTAA TGATTCGGAT ATTCAGGCGA AAGAATTGGT TCGCTTGCTG
AGAAATATTA AGTGCAAGAT CAATCTCATT CCATTTAATC CTTTTCCTGA ATCTGGGTTA
AAGCGTTCAT CGGCTCAGCG AGTCAATGCC TTTGCTGGCA TTCTGTTAGA TGCTGGAATG
GTAGCCACTG TGCGTAAAAC ACGCGGCGAC GATATTGCCG CTGCGTGCGG TCAGTTGGCT
GGCGATGTTG TTGACCGTAC TCGTGTGCGT GAGCGCGATA TACATAGCGC TGAGATCGAA
ATTGCAGAAG TAGAGTCTGA TGTACAACCT AACGAGCAGC CAATTGAATG GCTCAAAAAG
TTAACTTAA
|
|---|
| Protein sequence | MTSPRVNLLD FDADQMAAYV AGLNEKPFRA KQLMQWIHQR GVSDINDMSD LAKSFRATLL
DKVEVLSLPV IKDEHATDGT RKWLLDVGAG NAVESVFIPE DDRGTLCISS QAGCAVNCRF
CSTGRQGFSR NLTSGEIIGQ LWFAEHLLRN DPEAIRRIEK YPTPGWEHTG RVISNVVMMG
MGEPLLNYDN VVSALRLMLD DRAYGLSRRR VTVSTSGVVP MIDRLAQDCP VALAVSLHAP
NDALRDQLVP LNQKYPLREL LDACERYLPF APRDFLTFEY CMLDGVNDSD IQAKELVRLL
RNIKCKINLI PFNPFPESGL KRSSAQRVNA FAGILLDAGM VATVRKTRGD DIAAACGQLA
GDVVDRTRVR ERDIHSAEIE IAEVESDVQP NEQPIEWLKK LT
|
|---|
| |