| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1139 |
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| Symbol | |
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| ID | 5053776 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | + |
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| Start bp | 1189234 |
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| End bp | 1190757 |
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| Gene Length | 1524 bp |
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| Protein Length | 507 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640471310 |
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| Product | tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit |
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| Protein accession | YP_001155919 |
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| Protein GI | 145589322 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain
[COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain |
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| TIGRFAM ID | [TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
[TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCAAAA TCAAACAAAA CGACCTCATT CAAAGCGTTG CCGATGCATT TCAGTTCATT
TCTTACTACC ACCCCAAGGA CTTTATTGAT GCCATGGGCA AAGCTTATGA ACTAGAAAAA
GGTGAAGCTG CTAAAGATGC CATCGCTCAA ATTCTGACCA ATAGCCGCAT GTGTGCGGAA
GGTCATCGCC CTCTTTGCCA AGATACGGGT ATTTCTTTGG TATTCCTCAA GATCGGTATG
AACGTTCAGT GGCCTGATGC CACCATGAGC GTAACTGAGA TGGTGAATGA AGGTGTACGT
CGTGCCTACC TAAATCCAGA CAATATGTTG CGTGCTTCTG TATTGGCTGA TCCTGCAGGT
AAACGTAAAA ATACTGGTGA CAACACTCCC GCCGTTGTTC ATTACGAAAT CGTACCTGGC
GATGATGTAG AAGTGATCTG TGCCGCAAAA GGTGGTGGCT CTGAAAACAA AGCCAAGATG
GTCATGCTCA ACCCATCCGA CTCGATTGTG GATTGGGTTG TTAAAACTGT TCCCACTATG
GGTGCTGGTT GGTGCCCTCC CGGCATTCTC GGCATTGGTA TTGGTGGCAC CCCTGAAAAA
GCGATGTTAA TGGCCAAGGA AGCCTTGATG GGGCCTGTAG ATATTCAAGA ACTCATTGAG
CGCGGCCCAA AGAATCGTGT TGAAGAACTC CGTCTAGAGA TTTTTGACAA GGTAAATAAA
TTAGGTATTG GTGCACAAGG CTTGGGTGGT CTGTCTACCG TCTTGGATAT TAAGATTTTG
GATTACCCAA CGCATGCCGC ATCTTTACCA GTTGCGATGA TTCCGAACTG TGCTGCTACA
CGCCACGTGC ATTTCCACTT GCATGGTGAT GGTCCGGCTA AATTAGAAAT ACCTTCTTTA
TCCGATTGGC CAGATGTTAC TTGGACACCG GATGTTAAAA AATCTAAGCG AGTCAATCTA
GATACCTTGA CGGCCGAAGA AGTAGCTAGC TGGAAACCAG GCGAAACTTT ATTACTCAAC
GGCAAGATTT TGACTGGTCG CGATGCTGCG CATAAACGTA TTCAGGACAT GCTAGCTAAG
GGTGAAGAGT TGCCTGTGAG CTTTAAAAAT AGAGTGATTT ATTACGTTGG CCCAGTAGAT
CCTGTACGTG ATGAAGTTGT CGGCCCTGCA GGTCCGACTA CCTCAACCCG AATGGATAAG
TTCACTGAAA TGATGCTGGC TAAAACAGGT CTTATTTCTA TGATCGGTAA AGCTGAGCGT
GGCCCTGCCG CGATTGAAGC CATTAAAAAG CATAAATCAG CCTATTTAAT GGCTGTTGGT
GGTGCCGCCT ACTTAGTTTC TAAAGCCATT CAGCATTCCA AAGTAGTTGG TTTTGCGGAC
TTGGGAATGG AAGCCATTTA CGAGTTTGAT GTCAAAGATA TGCCGGTAAC CGTGGCAGTG
AACTCCGAGG GAATCTCAAT GCATGAGACT GGACCAAAAG AGTGGCAAGC CAAAATTGGC
AATATCCCAG TCACCATTGC TTAA
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| Protein sequence | MTKIKQNDLI QSVADAFQFI SYYHPKDFID AMGKAYELEK GEAAKDAIAQ ILTNSRMCAE
GHRPLCQDTG ISLVFLKIGM NVQWPDATMS VTEMVNEGVR RAYLNPDNML RASVLADPAG
KRKNTGDNTP AVVHYEIVPG DDVEVICAAK GGGSENKAKM VMLNPSDSIV DWVVKTVPTM
GAGWCPPGIL GIGIGGTPEK AMLMAKEALM GPVDIQELIE RGPKNRVEEL RLEIFDKVNK
LGIGAQGLGG LSTVLDIKIL DYPTHAASLP VAMIPNCAAT RHVHFHLHGD GPAKLEIPSL
SDWPDVTWTP DVKKSKRVNL DTLTAEEVAS WKPGETLLLN GKILTGRDAA HKRIQDMLAK
GEELPVSFKN RVIYYVGPVD PVRDEVVGPA GPTTSTRMDK FTEMMLAKTG LISMIGKAER
GPAAIEAIKK HKSAYLMAVG GAAYLVSKAI QHSKVVGFAD LGMEAIYEFD VKDMPVTVAV
NSEGISMHET GPKEWQAKIG NIPVTIA
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