| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1109 |
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| Symbol | |
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| ID | 5053199 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 1151177 |
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| End bp | 1154068 |
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| Gene Length | 2892 bp |
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| Protein Length | 963 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640471279 |
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| Product | formate dehydrogenase, alpha subunit |
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| Protein accession | YP_001155889 |
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| Protein GI | 145589292 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3383] Uncharacterized anaerobic dehydrogenase |
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| TIGRFAM ID | [TIGR01591] formate dehydrogenase, alpha subunit, archaeal-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.612386 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGCAC CCACAAATCC GAAAGAACTG CAATTGCAAA CCGTTGAATT CAAATTAGAC
GGCAAGACGA TTGTTTCTTA TGAAGGTGAA ACAATTCTCA AGGCAGCAAA GCGTCACGGT
ATTGATATTC CGCATCTTTG CTTCAAAGAT GGTTATCGCC CAGACGGAAA TTGCCGTGCT
TGTGTTGTCG AAATTAATGG TGAGCGCACC TTGGCGCCTA GCTGCTGCAG AACCGCCACT
CCAGGCATGG AAGTGCAAGC CAATAGCGAG CGTGCTGTAA AGAGTCAAAA GCTTGTTTTG
GAGATGTTGC TCTCTGATAT GCCAGACCAA GGTTTTAAAT GGGTGGGCGA TAGCAAGGCA
GAAGAAGAGC AGCATCAGCA TGGTGAGCTC AGCACTTGGG CTGCACGTAT GGATGTCACT
GTTCGTCCCG AGCTCAAAGC ACTGCGTAGA GATAAAGTCG CTCACGATAT CTCTCATCCT
GCGATGGCTG TCAATCTTGA TGCCTGTATT CAATGTAACC GCTGTGTACG AGCTTGCCGT
GAAGAGCAGG TGAATGATGT GATTGGTTAC GCGATGCGTG GTGGACATAG CGAAATTGTG
TTTGATCTAA ACGATCCAAT GGGCGAGAGT ACCTGTGTTG CCTGCGGTGA ATGTGTGCAG
GCTTGTCCTA CTGGCGCATT GATGCCAAAA GGATTGATTG GTTCACAAAT CGTCGATCGT
AAAGTAGATT CTGTTTGCCC ATTCTGCGGA GTAGGTTGTC AAATTACCTA TAACGTGAAA
GATGAAAAGA TTGTGAGTGT TGAGGGTCGT GATGGCCCAG CGAACCATAA TCGTTTGTGC
GTTAAAGGTC GCTTTGGCAT GGATTACATC CATAACCCAC AGCGTTTAAC CAAGCCGCTG
ATACGTAAAC CTGGCGTTCC TAAAGATGAA TCTTTGCTCG AGCGTGATCA AGATTGGTCT
GAGATCTTCC GCGAAGCAAC ATGGGAAGAG GCGATTGAGT TTGCTGGCGG TGGGTTGAAG
AAACTCAAAG ATCAGTACGG CAATAAAGTG TTAGCAGGAT TTGGTTCTGC AAAAGGAAGT
AACGAAGAGG CGTATTTATT CCAAAAGCTA GTACGCACAG GCTTTGGCAG CAATAACGTA
GACCATTGCA CTCGTCTTTG CCATGCTTCA TCTGTAGCAG CGCTTTTAGA GGGTGTGGGT
TCTGGTGCTG TAAGTAATCA GGTAAACGAT GTTGAGCATT CCAGCTTAAT CATGTTGATT
GGATCGAACC CAACAGCCAA TCACCCGGTT GCTGCAACTT GGTTTAAGAA TGCTGCTAAG
CGTGGCGCAA AGATTGTGTT GTGCGATCCT CGTAAAACTG AAATCAGTAA ACATGCTTGG
CGCACTATGC AGTTCAAGCC TGATACTGAT GTAGCGATGC TCAATGCCAT GATCTATACG
ATCATTGAAG AAGGCTTGGT TGATCAAGAA TTTATCAAAA ATCGCTCTAA TAACTTTGAG
GCACTCAAAG AAAATATCAA GGGGTATAGC CCTGAAGCGA TGGCGCCAAT CTGTGGTATC
CCAGCTGAGA CACTGCGTGA GGTTGCTAGA GAATTTGCCA CTACTAAATC TGCGATGATT
TTGTGGGGCA TGGGCGTGAG TCAACACGTG CATGGCACTG ATAACGCTCG CTGCTTAATT
GCGCTCGTGA GTATTACTGG CCAAATTGGT AAACCGGGTT CTGGTCTACA TCCATTGCGT
GGTCAAAACA ATGTGCAAGG TGCTAGTGAT GCTGGTTTGA TTCCGATGAT GTTCCCGAAC
TATCAAAGGG TTGATAACCC ACAGGCGCAT GCTTGGTTTG AGAAATTCTG GGATACACCG
CTTGATAAAA AGCCGGGTTA CACCGTAGTT GAAATCATGC ACAAAATCAC TGCACCTGAT
AGCGATCCCG ATAAGATTCG CGGCATGTAT GTTGAAGGTG AGAACCCTGC GATGAGTGAT
CCTGATTTGA ATCACGCACG ACACGCTTTG GCTTCTTTGG AGCATTTGGT GGTGCAAGAC
ATCTTTATGA CTGAAACTGC TCTTCTCGCA GACGTTGTAT TGCCTGCAAG CGCTTGGCCA
GAAAAGGTGG GTACTGCAAG TAATACTGAC CGTATGGTGC AAATGGGTAA AAAAGCCATT
GAACCTCCTG GAGATGCAAA GCCAGATCTA TGGATCATTC AGGAGATTGC TAAACGCATG
GGCTTGAACT GGAATTATCA AGGTTCTGAT GATGGAGTTG CTGAGGTCTA TGATGAAATG
CGTCAAGCCA TGCATGCCGC TATTAATGGT ATTACTTGGG AGCGCTTGGA AAAAGAATCG
AGTGTTACTT ATCCATGTTT ATCGCTTGAA GATCCGGGTC GCCCAATCGT TTTTGATGAT
GAGTTTGCTA CTACCGATGG AAAAGTGAAG TTGGTTCCTG CGGATATCAT CCCCGCAAAT
GAACGTCCTG ATTCTGAATT CCCGTTTGTC CTGATTACTG GTCGTCAACT TGAGCATTGG
CATACTGGAA GCATGACTCG TCGCGCAACA GTGCTCGATG CTATTGAGCC TATGGCCACT
GTATCGATGA ATGGTGAAGA TATGACTCAG CTAGGTGTGT CTGCTGGAGA TGTCATTACC
GTTCAGTCTC GTCGCGGTGA GGTAGGTATT CATGTACGTC GAGATGACGG TACACCACGT
GGTGTGATCT TTATTCCGTT TGCATACTAT GAGGCTGCTG CTAACCTCAT TACGAATTCT
GCGCTAGATC CGGTTGGCAA GATTCCAGAA TTTAAGTATT GCGCGGTCAA GTTGGCTAAA
GGTGGTCAAG CGTCCAAAGT AATGGGATAT GGCACTAACG ATCCAACACT CAATCCGGCG
GCTATTGTCT AA
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| Protein sequence | MNAPTNPKEL QLQTVEFKLD GKTIVSYEGE TILKAAKRHG IDIPHLCFKD GYRPDGNCRA
CVVEINGERT LAPSCCRTAT PGMEVQANSE RAVKSQKLVL EMLLSDMPDQ GFKWVGDSKA
EEEQHQHGEL STWAARMDVT VRPELKALRR DKVAHDISHP AMAVNLDACI QCNRCVRACR
EEQVNDVIGY AMRGGHSEIV FDLNDPMGES TCVACGECVQ ACPTGALMPK GLIGSQIVDR
KVDSVCPFCG VGCQITYNVK DEKIVSVEGR DGPANHNRLC VKGRFGMDYI HNPQRLTKPL
IRKPGVPKDE SLLERDQDWS EIFREATWEE AIEFAGGGLK KLKDQYGNKV LAGFGSAKGS
NEEAYLFQKL VRTGFGSNNV DHCTRLCHAS SVAALLEGVG SGAVSNQVND VEHSSLIMLI
GSNPTANHPV AATWFKNAAK RGAKIVLCDP RKTEISKHAW RTMQFKPDTD VAMLNAMIYT
IIEEGLVDQE FIKNRSNNFE ALKENIKGYS PEAMAPICGI PAETLREVAR EFATTKSAMI
LWGMGVSQHV HGTDNARCLI ALVSITGQIG KPGSGLHPLR GQNNVQGASD AGLIPMMFPN
YQRVDNPQAH AWFEKFWDTP LDKKPGYTVV EIMHKITAPD SDPDKIRGMY VEGENPAMSD
PDLNHARHAL ASLEHLVVQD IFMTETALLA DVVLPASAWP EKVGTASNTD RMVQMGKKAI
EPPGDAKPDL WIIQEIAKRM GLNWNYQGSD DGVAEVYDEM RQAMHAAING ITWERLEKES
SVTYPCLSLE DPGRPIVFDD EFATTDGKVK LVPADIIPAN ERPDSEFPFV LITGRQLEHW
HTGSMTRRAT VLDAIEPMAT VSMNGEDMTQ LGVSAGDVIT VQSRRGEVGI HVRRDDGTPR
GVIFIPFAYY EAAANLITNS ALDPVGKIPE FKYCAVKLAK GGQASKVMGY GTNDPTLNPA
AIV
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