| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1069 |
|---|
| Symbol | |
|---|
| ID | 5052326 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009379 |
|---|
| Strand | - |
|---|
| Start bp | 1073361 |
|---|
| End bp | 1074146 |
|---|
| Gene Length | 786 bp |
|---|
| Protein Length | 261 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640471237 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001155849 |
|---|
| Protein GI | 145589252 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.199007 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTAG GAATTCAAGG AAAAGTAGCT CTAGTAATGG CTTCAAGTCG TGGCTTAGGT
CAAGCGATGG CAGTTTCATT GGCTCGCGAA GGTGTCAAGG TAGCGGTAAC AGGGCGTAAT
GCAGAGGGTC TGCAGAAATC TGTTGAGTTG ATCGAGGCAG CTGGTGGAAA GGCTTTGGCT
TTATCTTGGG ATCTATCAGA CCCTACGGTG ATAGATGGCC TGGTTACCAG GGTGGAAAAT
GAATTGGGTC CAATTGATAT TCTTATTAAC AATACTGGCG GCCCTCCACC TACACCAGCG
GTAGGTCAAG ATCCTGCACT TTGGCAAAAA AGTTTTAATG ACATGGTGCT TTCATTAATC
GCTATTACAG ATCGAGTAAT TCCTGGTATG CGTCAGCGTC ACTGGGGCCG CATTATCACT
AGCACCACTT CTGGCGCGGT CGCTCCTATT AAGAACTTAG CAATTTCCAA TACCTTGCGG
GCTGCCTTGT TAGCTTGGTC AAAAACACTC TCTAGCGAAG TGGCTGCAGA TGGAATTACT
GTGAATGTCA TCATGCCTGG TAGGGTGGCG ACAGATCGCT TGCGTCAGCT GGATGAAGCG
CGCGCTAAAC GAGAGAGCAT CAGCTATGAA GAGGTAATTA AGGCGAGCCT GAGCCAGATT
CCGATGGGTC GTTACGGAGA TCCTCGTGAA TATGGCGATG CCGCGGCATT CTTGGCTAGT
CAGAATGCTT CTTTTATTAC TGGCACTGTC ATGCGTGTTG ATGGTGGTCA GATACAGGCC
ATTTGA
|
|---|
| Protein sequence | MDLGIQGKVA LVMASSRGLG QAMAVSLARE GVKVAVTGRN AEGLQKSVEL IEAAGGKALA
LSWDLSDPTV IDGLVTRVEN ELGPIDILIN NTGGPPPTPA VGQDPALWQK SFNDMVLSLI
AITDRVIPGM RQRHWGRIIT STTSGAVAPI KNLAISNTLR AALLAWSKTL SSEVAADGIT
VNVIMPGRVA TDRLRQLDEA RAKRESISYE EVIKASLSQI PMGRYGDPRE YGDAAAFLAS
QNASFITGTV MRVDGGQIQA I
|
|---|
| |