Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_1069 |
Symbol | |
ID | 5052326 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | - |
Start bp | 1073361 |
End bp | 1074146 |
Gene Length | 786 bp |
Protein Length | 261 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640471237 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_001155849 |
Protein GI | 145589252 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.199007 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGATTTAG GAATTCAAGG AAAAGTAGCT CTAGTAATGG CTTCAAGTCG TGGCTTAGGT CAAGCGATGG CAGTTTCATT GGCTCGCGAA GGTGTCAAGG TAGCGGTAAC AGGGCGTAAT GCAGAGGGTC TGCAGAAATC TGTTGAGTTG ATCGAGGCAG CTGGTGGAAA GGCTTTGGCT TTATCTTGGG ATCTATCAGA CCCTACGGTG ATAGATGGCC TGGTTACCAG GGTGGAAAAT GAATTGGGTC CAATTGATAT TCTTATTAAC AATACTGGCG GCCCTCCACC TACACCAGCG GTAGGTCAAG ATCCTGCACT TTGGCAAAAA AGTTTTAATG ACATGGTGCT TTCATTAATC GCTATTACAG ATCGAGTAAT TCCTGGTATG CGTCAGCGTC ACTGGGGCCG CATTATCACT AGCACCACTT CTGGCGCGGT CGCTCCTATT AAGAACTTAG CAATTTCCAA TACCTTGCGG GCTGCCTTGT TAGCTTGGTC AAAAACACTC TCTAGCGAAG TGGCTGCAGA TGGAATTACT GTGAATGTCA TCATGCCTGG TAGGGTGGCG ACAGATCGCT TGCGTCAGCT GGATGAAGCG CGCGCTAAAC GAGAGAGCAT CAGCTATGAA GAGGTAATTA AGGCGAGCCT GAGCCAGATT CCGATGGGTC GTTACGGAGA TCCTCGTGAA TATGGCGATG CCGCGGCATT CTTGGCTAGT CAGAATGCTT CTTTTATTAC TGGCACTGTC ATGCGTGTTG ATGGTGGTCA GATACAGGCC ATTTGA
|
Protein sequence | MDLGIQGKVA LVMASSRGLG QAMAVSLARE GVKVAVTGRN AEGLQKSVEL IEAAGGKALA LSWDLSDPTV IDGLVTRVEN ELGPIDILIN NTGGPPPTPA VGQDPALWQK SFNDMVLSLI AITDRVIPGM RQRHWGRIIT STTSGAVAPI KNLAISNTLR AALLAWSKTL SSEVAADGIT VNVIMPGRVA TDRLRQLDEA RAKRESISYE EVIKASLSQI PMGRYGDPRE YGDAAAFLAS QNASFITGTV MRVDGGQIQA I
|
| |